SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82487

Length: 656 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene82487 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydroxyproline-rich glycoprotein family protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	hydroxyproline-rich glycoprotein family protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ricin B-related lectin	IPR008997	-	0.0	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE7

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 181 - 306

Test code: 1

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: QGEDYRAPQGFGHVVHHESHRPFQRPEYGTPSDSFPRPSCETSExxxxxxxxxxxANPNDESQQWVMDETYSTKVKDEASYPSFSLVNKATGQALKHGLGETQPVLLTRYDPNEFDESILWTTSGDMGQGFRTIRLVNNIHLNLDAFHGDKKSGGIKDGNPVVLWSWKKGDNQLWKIVPF*

Protein Length: 182

Fln nts: CACAAGGAGAAGACTATCGTGCTCCTCAGGGATTTGGGCATGTCGTCCACCACGAATCTCATCGTCCATTTCAGAGACCAGAATATGGCACTCCCTCCGATTCGTTCCCGCGACCTAGCTGTGAGACTTCCGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGAATCCCAATGACGAGTCTCAGCAATGGGTGATGGATGAGACATACAGCACCAAAGTGAAAGACGAGGCTAGCTATCCTTCGTTTTCTCTGGTCAATAAGGCAACCGGTCAGGCCCTGAAGCATGGACTTGGAGAAACCCAACCCGTTCTCCTGACGCGATATGACCCAAACGAATTTGATGAGTCTATTCTTTGGACCACGAGTGGTGACATGGGGCAAGGGTTCAGAACAATACGATTGGTTAACAATATTCACTTGAATTTGGATGCTTTTCATGGAGATAAGAAATCAGGAGGAATCAAAGATGGTAACCCTGTAGTCCTTTGGTCGTGGAAGAAAGGAGATAATCAGCTCTGGAAGATAGTACCTTTCTGATTGTTTGACACAACTGCTCTAATGATCTTGTAGCTGCGCAATACTAAGCTTATTTCCATTAACTATTGCTTAATAGAATTTAGCCAACTATCCTGGAGGACTTTGCTTTAGGT

Fln Alignment:

sp_v1.1_unigene82487___QGEDYRAPQGFGHVVHHESHRPFQRPEYGTPSDSFPRPSCETSEDP*WLYRFGPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRNGSTVLVHANPNDESQQWVMDETYSTKVKDEASYPSFSLVNKATGQALKHGLGETQPVLLTRYDPNEFDESILWTTSGDMGQGFRTIRLVNNIHLNLDAFHGDKKSGGIKDGNPVVLWSWKKGDNQLWKIVPF
C0PQE7_______________QGEEHHAYQGSGHVIHHESHHPFQRPECETPSDSFPRPSGGSSEGSFTRPGYGPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRNGSAVLVHANANDKHQQWVMDETYSTKVKDEASCPSFSLVNKATGQVLKHGLGETQPVLLTEYQLNTFDESILWTMSGDMGQGYRTIRLVNNIHLNLDAFHGDKKSGGIKDGNPVVLWSWKKGDNQLWKIVPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain