SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82460

Length: 315 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene82460
AGGATCCGCTTGGATGCCATTGCGCCAACAATAATGCGAAAACACTGTTAACAGAGATCCTCAGGGAGTTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGTGCAGGTCCAGTAGCAGATGATATGTTTCATTGGCAGGCAACTATCATGGGACCTTCTGACAGTCCCTATGCAGGGGGTGTATTTCTTGTGACTATTCATTTTCCTCCTGATTATCCATTCAAGCCCCCGAAGGTCGCGTTTAGGACTAAAGTTTTCCTCCTGATTATCCATTCAAGCCCCCGAAGGTCGCGTTTAGGACTAAAGTTTC

Ace file of the UniGene sp_v1.1_unigene82460

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Ricinus communis RepID=B9SRR5_RICCO	-	-	1.0e-34	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	1.0666e-34	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.0666e-34	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	1.0666e-34	96%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	1.0666e-34	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	1.0666e-34	96%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	1.0666e-34	96%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMC9

Fln msg: Overlapping hits, possible frame ERROR between 263 and 260, Distance to subject end: 73 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 104 - 148

Fln protein: DPLGCHCANNNAKTLLTEILRELKDLQKDPPTSCSAGPVADDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKxxxPDYPFKPPKVAFRTKV

Protein Length: 105

Fln nts: AGGATCCGCTTGGATGCCATTGCGCCAACAATAATGCGAAAACACTGTTAACAGAGATCCTCAGGGAGTTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGTGCAGGTCCAGTAGCAGATGATATGTTTCATTGGCAGGCAACTATCATGGGACCTTCTGACAGTCCCTATGCAGGGGGTGTATTTCTTGTGACTATTCATTTTCCTCCTGATTATCCATTCAAGCCCCCGAAGGTCGCGTTTAGGACTAAAxxxxxxxxxCCTGATTATCCATTCAAGCCCCCGAAGGTCGCGTTTAGGACTAAAGTTTC

Fln Alignment:

sp_v1.1_unigene82460___ILRELKDLQKDPPTSCSAGPVADDMFHWQATIMGPSDSPYAGGVFLVTIHxxxxxxxxxxxxxxxxxxx
B8LMC9_______________ILKELKDLQKDPPTSCSAGPVADDMFHWQATIMGPSDSPYAGGVFLVTIHxxxxxxxxxxxxxxxxxxx

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
64	33		66		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain