SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82448

Length: 493 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene82448
TCTCTTTACTTCCTCACCCAACTTTGATACCGACCCCGTGCTTCGTGCCGATGATATACTCGATGTATATATCAAAGAATAAGGTCGTGATGTTTGCTGTTAGTCACTTTGCAGAGATAATTCACTTAGCACATCCACAGATCTGTTCGTCTCCTGTAAAGAAACGGTAATTCAACAGCAAAAAATGCGTGGATTCAGTAAAGTTGGGGCGGACGACCTTGAAACGGGCTATGGCGGAGGGGGAGTCCTTTATCCCGGTTTCAGCCTCGAAGACAACGCAATGCGATGGGATTTCCTGAGGAAAGTGTATTCAATCTTGAGCACGCAATTGTTTTTGACCGTAATTGTCGCTGCAGCCGTGGTTTTGTATTCACCCATCAATCTTTTCCTGGTTCAAACCCCGGGCCTCTTGTTGGGCATCTCCATCTTGCCTTTAATCTTGATGTGCCCTCTTTATGCCTATCATCAGAAGCATCCGGCTTCGCAGTGAGTG

Ace file of the UniGene sp_v1.1_unigene82448

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutamate binding [Arabidopsis thaliana] gb\|AAC78271.1\| putative glutamate-/aspartate-binding peptide [Arabidopsis thaliana] emb\|CAB77754.1\| putative glutamate-/aspartate-binding peptide [Arabidopsis thaliana] gb\|AAU44503.1\| hypothetical protein AT4G02690	-	-	2.0e-10	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	glutamate binding protein	-	-	2.19329e-24	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Inhibitor of apoptosis-promoting Bax1-related	IPR006214	-	2.19329e-24	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 140 aas, your sequence is shorter than subject: 102 - 245

Fln protein: MRGFSKVGADDLETGYGGGGVLYPGFSLEDNAMRWDFLRKVYSILSTQLFLTVIVAAAVVLYSPINLFLVQTPGLLLGISILPLILMCPLYAYHQKHPASQ*

Protein Length: 103

Fln nts: TCTCTTTACTTCCTCACCCAACTTTGATACCGACCCCGTGCTTCGTGCCGATGATATACTCGATGTATATATCAAAGAATAAGGTCGTGATGTTTGCTGTTAGTCACTTTGCAGAGATAATTCACTTAGCACATCCACAGATCTGTTCGTCTCCTGTAAAGAAACGGTAATTCAACAGCAAAAA_-_ATGCGTGGATTCAGTAAAGTTGGGGCGGACGACCTTGAAACGGGCTATGGCGGAGGGGGAGTCCTTTATCCCGGTTTCAGCCTCGAAGACAACGCAATGCGATGGGATTTCCTGAGGAAAGTGTATTCAATCTTGAGCACGCAATTGTTTTTGACCGTAATTGTCGCTGCAGCCGTGGTTTTGTATTCACCCATCAATCTTTTCCTGGTTCAAACCCCGGGCCTCTTGTTGGGCATCTCCATCTTGCCTTTAATCTTGATGTGCCCTCTTTATGCCTATCATCAGAAGCATCCGGCTTCGCAGTGAGTG

Fln Alignment:

sp_v1.1_unigene82448___GFSKVGADDLETXXXXXXVLYPGFSLEDNAMRWDFLRKVYSILSTQLFLTVIVAAAVVLYSPINLFLVQTXXXXXXXXXXXXXXMCPLYAYHQKHPAS
A9NWR6_______________GFSKVGVEDVEMGHGGGGVLYPGLSLQDNEMRLGFLKKVYSILSMQLLLTVIVAATVVLYTPATLFLVKTPGLLLGISILPLILMCPLYAYHQKHPVN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain