SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82434

Length: 618 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene82434 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	0.0	93%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 56 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 206 - 761

Fln protein: LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEYRRTLSDYNIQNESTLHVVQLRGGMxxxVKTLTGKTIxxxIDGRTMADYNIKKESTLHLVLRLRGGMQIFVKMLTGKMITLEVESC

Protein Length: 207

Fln nts: CCCTGACCGGCAAGACCATCACGCTTGAAGTTGAGAGCTCCGATACTATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCAGCAGAGATTGATCTTTGCAGGCAAGCAACTTGAAGATGGGAGGACTCTGGCCGACTACAACATCCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTTAGAGGTGGGATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACAATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCACCGGACCAGCAGAGGTTGATCTTTACTGGAAAGCAACTTGAGTACAGACGCACTCTTTCTGATTACAACATCCAGAACGAGTCGACTCTTCATGTCGTCCAGCTCAGAGGCGGGATGxxxxxxxxxGTGAAAACCCTGACCGGCAAGACCATTxxxxxxxxxATTGATGGGAGGACTATGGCGGATTACAACATTAAGAAGGAGTCAACCCTGCATCTTGTCCTTCGGCTTCGTGGTGGTATGCAGATATTTGTGAAGATGTTGACAGGAAAGATGATCACACTAGAGGTTGAGAGCTGCGA

Fln Alignment:

sp_v1.1_unigene82434___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGRTMADYNIKKESTLHLVLRLRGGMQIFVKMLTGKMITLEVES
Q41067_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTAKTITLEVES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain