SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82420

Length: 459 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene82420
CAGGTTTTGTATTGTGTTGATTTCATTTAAAGATGCAGATATTTGTGAAGACCTTGACCTCAAGTGTTATGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGTTGGAAGATGGACGCACTCTCGCCGATTACAACATCCAGAAGGAATCTACTCTTCACCTCGTCCTCCGTCTTAGAGGTGGGATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACTATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACCAGCAGAGGCTCATATTCGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACATCCAGAAAGAGTCTACGCTTCACCTTG

Ace file of the UniGene sp_v1.1_unigene82420

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	polyubiquitin containing 7 ubiquitin monomers	-	-	95%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	95%
Blast2go	protein	-	-	95%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	95%
Blast2go	Ubiquitin conserved site	IPR019954	-	95%
Blast2go	Ubiquitin supergroup	IPR019955	-	95%
Blast2go	Ubiquitin subgroup	IPR019956	-	95%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 68 aas, your sequence is shorter than subject: 142 - 229

Fln protein: MQIFVKTLTSSVMVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL

Protein Length: 143

Fln nts: CAGGTTTTGTATTGTGTTGATTTCATTTAAAG_-_ATGCAGATATTTGTGAAGACCTTGACCTCAAGTGTTATGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGTTGGAAGATGGACGCACTCTCGCCGATTACAACATCCAGAAGGAATCTACTCTTCACCTCGTCCTCCGTCTTAGAGGTGGGATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACTATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACCAGCAGAGGCTCATATTCGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACATCCAGAAAGAGTCTACGCTTCACCTTG

Fln Alignment:

sp_v1.1_unigene82420___MQIFVKTLTSSVM---VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
142	66	33			0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain