SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82385

Length: 1377 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene82385 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	98%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	ubiquitin	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	98%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	98%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	98%
Blast2go	aging	GO:0007568	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	nucleolus	GO:0005730	Cellular Component	98%
Blast2go	vacuole	GO:0005773	Cellular Component	98%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	98%
Blast2go	Ubiquitin conserved site	IPR019954	-	98%
Blast2go	Ubiquitin supergroup	IPR019955	-	98%
Blast2go	Ubiquitin subgroup	IPR019956	-	98%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: warning!, putative chimeric sequence! or repetitive structureatg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 278 - 761

Fln protein: KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFxxxxxxxxxxLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLANYNIQKESTLHLVLRLRGGF*

Protein Length: 279

Fln nts: AAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAGCGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACACTGGCAGACTACAATATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGTATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACTTTGGAAGTTGAGAGCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTTGCCGATTACAACATCCAGAAAGAATCCACCTTGCACCTTGTCCTCCGTCTGAGGGGTGGCATGCAGATCTTTGTCAAAACCCTAACTGGTAAGACGATTACTTTGGAAGTTGAGAGCTCGGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGTAGGACCTTGGCTGACTACAACATTCAAAAgGAGTCAACCCTGCATCTGGTGCTTCGTCTAAGAGGAGGGATGCAGATCTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGAAGTGGAAAGCTCGGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTCGCACTCTGGCCAATTATAATATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCTTTTAGGTGGATGGGCTCTTATGTGTCAATGATGGTCTGGTGATGTTCAGTTGTCGTCCTGCTTGTCGTGGACAAGTACTGTTTATGTTTCTATGTCgTaGTGtcCTTGtcTaTcatTCtATGTCgAcGTGatgTTAtcATgTCCACaTTGTTTGTTGGTCAGTCGAAGCACTACCTGGTCGGTAGTGCTATGCTATTTCCTTTAATATAAGGACTATGTTATCTGTTGTGTGAATCAATCTGCTATTATGTGTTAAGTAAATGTAGCTGAAAATGTTGTGCTATTTTTTTTGGTAGGCTATATATGCTAAAAATCTTAGGTGAAATTTAAGTTAGGCTGAAATTACTATGTCTATGCATTCATTGGCTTGCTTATCTTTTGGATATTCAGTGGCTTTCCTATGCCCTCAAGAGATTGCTGATGGGAGTTACTGAGAGATGGTCAATATTTGTATTGGTTTTCGTATCTCTGGGGGAGGTTGATGAAACTTTTATATTGGCGATCGTATCCTGTCAATAGTTTGGATCTTCATTGGCTTTGTTGAGGGAA

Fln Alignment:

sp_v1.1_unigene82385___KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q41067_______________KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
698		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain