SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82364

Length: 239 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene82364
CGTCGTGACCTTGGCTGTCACTCAGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGAACTCTAGCGGACTACAACGTCGTGACGTTATCTTCGCTGTACCTGGTTCTTCGTTTGAGGGGTGGTATGCAGATATTCGTGAAAACTCTCACTGGCAAGACAATCACTTTGGAAGTTGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATACCCC

Ace file of the UniGene sp_v1.1_unigene82364

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin-like (Fragment) n=2 Tax=Eukaryota RepID=Q5K5A7_ORYSA	-	-	2.0e-28	90%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	90%
Blast2go	protein	-	-	3.26844e-28	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin	IPR000626	-	3.26844e-28	94%
Blast2go	Ubiquitin supergroup	IPR019955	-	3.26844e-28	94%
Blast2go	Ubiquitin subgroup	IPR019956	-	3.26844e-28	94%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 79 - 229

Fln protein: VVTLAVTQLIFAGKQLEDGRTLADYNVVTLSSLYLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGAACTCTAGCGGACTACAACGTCGTGACGTTATCTTCGCTGTACCTGGTTCTTCGTTTGAGGGGTGGTATGCAGATATTCGTGAAAACTCTCACTGGCAAGACAATCACTTTGGAAGTTGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATACCCC

Fln Alignment:

sp_v1.1_unigene82364___QLIFAGKQLEDGRTLADYNVVTLSSLYLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP
Q7FPA4_______________RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
85	33	33		33	0.997751
87	66			33	0.997467
88	33	66			0.997476
89		33	66		0.997467
90			33	66	0.997476
91	33		33	33	0.997752
92	66		33		0.997476
93		33	33	33	0.997752
99	33	33	33		0.997753
103	33	33		33	0.997753

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain