SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82277

Length: 438 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene82277
GCAGTCTCAGTGGCCTGTCACTCACTGCGAGTGAAGGGTAAGAAAGAAATGGTATGGAAGTTCAAGAAGTCTTTGTATGGGTTAAAACAGTCACCAAGGATGTGGTATTAGAAATTTGATAGATTTATACAGGGACTTTGCTTCACCAGAAGCAAAGCAGATCACTTTGTGTATTTTAAATTAATTGGTGACTATGTTATTTATCTGGTTTTGTATGTGGATTATATCTTGCTAGTTGGAAATGACAAAGAAATTATCCAGGATTTGTAGACCCATTTGTCCTCGAAATTTGATATGAAAGATCTTAGTGCTGCAAATTATATTTTGGGCATGGAAAATAAAAGAGATCAAATAAAGAGGAAGCTCTGGATAAACCAGATGAGGTATGTCAAGGTAGTATTGCTAAGGTTTAATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene82277 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL	-	-	6.0e-31	53%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	60%
Blast2go	gag-pol polyprotein	-	-	3.11752e-31	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 201 aas, your sequence is shorter than subject: 139 - 542

Fln protein: AVSVACHSLRVKGKKEMVWKFKKSLYGLKQSPRMWY*KFDRFIQGLCFTRSKADHFVYFKLIGDYVIYLVLYVDYILLVGNDKEIIQDL*THLSSKFDMKDLSAANYILGMENKRDQIKRKLWINQMRYVKVVLLRFN*

Protein Length: 140

Fln nts: GCAGTCTCAGTGGCCTGTCACTCACTGCGAGTGAAGGGTAAGAAAGAAATGGTATGGAAGTTCAAGAAGTCTTTGTATGGGTTAAAACAGTCACCAAGGATGTGGTATTAGAAATTTGATAGATTTATACAGGGACTTTGCTTCACCAGAAGCAAAGCAGATCACTTTGTGTATTTTAAATTAATTGGTGACTATGTTATTTATCTGGTTTTGTATGTGGATTATATCTTGCTAGTTGGAAATGACAAAGAAATTATCCAGGATTTGTAGACCCATTTGTCCTCGAAATTTGATATGAAAGATCTTAGTGCTGCAAATTATATTTTGGGCATGGAAAATAAAAGAGATCAAATAAAGAGGAAGCTCTGGATAAACCAGATGAGGTATGTCAAGGTAGTATTGCTAAGGTTTAATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

sp_v1.1_unigene82277___VKGKKEMVWKFKKSLYGLKQSPRMWY*KFDRFIQGLCFTRSKADHFVYFKLIGXXXXXXXXXXXXXXXVGNDKEIIQDL*THLSSKFDMKDLSAANYILGMENKRDQIKRKLWINQMRYVKVVLLRFN
Q9M5J7_______________VKGNKELVCKINKSLCGVKQSPRMWYQKFDTYILRLGFVISRADHCVYSKQVGNHFIYVVLYVDDMLLVGNNMDVIKEVKSQLSSKFDMKDLGAANFILGMDIKRDRANRKLWLNQRKYVETILQRFN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain