SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82236

Length: 475 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene82236
CGTCGTGACCTTGGCTGTCACTCAGTCCAATAACATCGACTGCCAACCAGACTACTCCACACGACAACACTGGCGCCCCTGCTTCAACCCTAACCCCTGTTTATATATATCATCTCGTCTTTGCCTGTCTGTCATTCATATGTTGTTTTCAGTTGCATCTTTCCAAATTGAACGATTTTCAGCTCCCCTGTATTTGTTTCTTGATCCTTATCACAGGAGTTTGCATCCGTTGGCTCTCTCATAGATAGATAGTGACTGTTTCCCTAAAATGGCTGGTTCTGCTTCGCGCCTTCTACTTACTGTCATGCTGCAAATGGCAGTGTGTATGGCGATATTACGTGCATCTTCTGGTGCCTTGGTGGAAGAGCCATCTGTTGTTTTAACTTACCATGATGGTCTTCTGCTTTCTACAAGTGAACTAATCTCTGTCCATCTCATTTGGTATGGTAAATTCACCCCTCTTCAACGTTCCATT

Ace file of the UniGene sp_v1.1_unigene82236

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EXL2; EXL2 (EXORDIUM LIKE 2)	-	-	2.0e-06	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	unknown [Picea sitchensis]	-	-	1.51743e-17	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ56

Fln msg: Distance to subject end: 282 aas, your sequence is shorter than subject: 69 - 359

Fln protein: MAGSASRLLLTVMLQMAVCMAILRASSGALVEEPSVVLTYHDGLLLSTSELISVHLIWYGKFTPLQRSI

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCCAATAACATCGACTGCCAACCAGACTACTCCACACGACAACACTGGCGCCCCTGCTTCAACCCTAACCCCTGTTTATATATATCATCTCGTCTTTGCCTGTCTGTCATTCATATGTTGTTTTCAGTTGCATCTTTCCAAATTGAACGATTTTCAGCTCCCCTGTATTTGTTTCTTGATCCTTATCACAGGAGTTTGCATCCGTTGGCTCTCTCATAGATAGATAGTGACTGTTTCCCTAAA_-_ATGGCTGGTTCTGCTTCGCGCCTTCTACTTACTGTCATGCTGCAAATGGCAGTGTGTATGGCGATATTACGTGCATCTTCTGGTGCCTTGGTGGAAGAGCCATCTGTTGTTTTAACTTACCATGATGGTCTTCTGCTTTCTACAAGTGAACTAATCTCTGTCCATCTCATTTGGTATGGTAAATTCACCCCTCTTCAACGTTCCATT

Fln Alignment:

sp_v1.1_unigene82236___MAGSASRLLLTVMLQMAVCMAILRASSGA--------LVEEPSVVLTYHDGLLLSTSELISVHLIWYGKFTPLQRSI
B8LQ56_______________MAGYVSWPRLTAMLQMVVCMAILCSSPAAGHLRKLAALVEEPSVVLTYHDGPLLSTSGVIPVHLIWYGKFTPVQRTI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
115	60		40		1.0
121		80	20		0.999996
123	20			80	0.999996
125		20	40	40	1.0
127			40	60	1.0
128	40		60		1.0
129		80	20		0.999996
134			44	55	1.0
136	22			77	0.999999
137		20	40	30	1.0
141	66	33			1.0
142		11		88	0.923564
143		33		66	1.0
144	33	66			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain