SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82129

Length: 414 nt

UniGene Fasta

>sp_v1.1_unigene82129
CTTCGTTTATGTGTAGTATTTGCTTGCCTTCGCCTTCGTCTTGACCTTGGCTGTCAGTCGTGAGAATGGCTTCAGCTGTGCAATGTGCCGCCCTGAGCAGCCGCCGCGAGCTTGAGAACGTGTTCCGCAAGTTGGACACCAACGGCGACGGCAAAATATCCAAGTTGGAACTGAGTGCCCTCATTACGGAGGCGGAGATTGAAGGGGTGATGAAGGAGGTGGACTCCAACAAAGATGGCTTCATCAACTTGGACGAGTTCGTGGAGGCCAACTCCAAGAACCTCAACGCCGCCTGTCACGCCCCCAATATTTTTTCGTTTATTGGCGGGGTGCGGCACCACCGAGTGCCCACTTTTACCAAGTACATGTTCGTGGACTACGCCTTTCGGCAAACACGTTTACTTAATTTCCAAC

Ace file of the UniGene sp_v1.1_unigene82129

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	5.0e-26	88%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	72%
Blast2go	calcium binding protein	-	-	8.7983e-26	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	8.7983e-26	94%
Blast2go	EF-hand-like domain	IPR011992	-	8.7983e-26	94%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	8.7983e-26	94%
Blast2go	EF-hand	IPR018248	-	8.7983e-26	94%
Blast2go	EF-HAND 2	IPR018249	-	8.7983e-26	94%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: STOP codon was not found. Distance to subject end: 30 aas, your sequence is shorter than subject: 116 - 166

Fln protein: MASAVQCAALSSRRELENVFRKLDTNGDGKISKLELSALITEAEIEGVMKEVDSNKDGFINLDEFVEANSKNLNAACHAPNIFSFIGGVRHHRVPTFTKYMFVDYAFRQTRLLNFQ

Protein Length: 117

Fln nts: CTTCGTTTATGTGTAGTATTTGCTTGCCTTCGCCTTCGTCTTGACCTTGGCTGTCAGTCGTGAGA_-_ATGGCTTCAGCTGTGCAATGTGCCGCCCTGAGCAGCCGCCGCGAGCTTGAGAACGTGTTCCGCAAGTTGGACACCAACGGCGACGGCAAAATATCCAAGTTGGAACTGAGTGCCCTCATTACGGAGGCGGAGATTGAAGGGGTGATGAAGGAGGTGGACTCCAACAAAGATGGCTTCATCAACTTGGACGAGTTCGTGGAGGCCAACTCCAAGAACCTCAACGCCGCCTGTCACGCCCCCAATATTTTTTCGTTTATTGGCGGGGTGCGGCACCACCGAGTGCCCACTTTTACCAAGTACATGTTCGTGGACTACGCCTTTCGGCAAACACGTTTACTTAATTTCCAAC

Fln Alignment:

sp_v1.1_unigene82129___ASAVQCAALSSRRELENVFRKLDTNGDGKISKLELSALI----TEAEIEGVMKEVDSNKDGFINLDEFVEANSKNLNAA
O22429_______________ASAVQCATLPGRLELEDVFRKFDTNGDGKISKSELSAILKCRSSEEEIDGVMKDVDSNKDGFISFDEFVAANSNGLNAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain