SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene82059

Length: 1057 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene82059

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PAD4; PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase	-	-	6.0e-28	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	phytoalexin-deficient 4-2 protein	-	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW04

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 29 aas, your sequence is shorter than subject: 352 - 616

Fln protein: NHWNFGLNIHA*RSPHLTARLA*TCRQRDLSTIAVEHLHHSCRAAPFLRWNNIAV**ITCLYCEYCASNAGLLSFLHASFLSCKI*YKIFTVALYLSALLLLNFIFKHTN*SLKCC*IGDDYFVQNDHAQLGLQKAGETENKYNTHVDRLAIELSVRQRTMAELEWYKEICEKEGGIGYYDTFKNQDMKDISADTRKVKLAEFWDEIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIAYYYRNNINGNYLSDGRHNRHKVLQKWMEAKEKARGSRGQRPRTKRASLTPDSCLWAHVEEAWKDLKNLKQGQHESLQKLEKFEEYVTKMENDLSISRDVFFQGSRFKMW

Protein Length: 353

Fln nts: AAATCACTGGAACTTTGGCCTAAACATACACGCATAGAGATCTCCCCACCTCACTGCAAGGTTGGCCTAAACATGCAGACAGAGGGATCTCTCCACCATAGCTGTAGAGCATCTCCACCATAGCTGTAGAGCAGCTCCCTTCTTGAGATGGAACAACATTGCAGTCTAATGAATTACCTGTCTTTACTGTGAATACTGTGCTTCCAATGCTGGCCTTCTGAGTTTTCTGCATGCTAGTTTTTTATCGTGTAAGATCTGATATAAGATTTTTACTGTAGCGTTGTATTTATCTGCTCTCCTACTCTTGAATTTTATTTTCAAGCACACTAATTGATCTTTGAAATGTTGTTGAATTGGTGATGATTACTTTGTGCAGAATGATCATGCACAGCTTGGCCTACAGAAAGCTGGAGAAACTGAGAACAAGTATAACACACATGTTGATAGGCTAGCTATTGAGTTAAGCGTAAGACAAAGAACTATGGCAGAGCTTGAATGGTATAAAGAGATTTGTGAGAAGGAGGGTGGCATCGGgTATTATGATACCTTCAAGAACCAAGACATGAAGGATATTAGTGCTGATACGCGTAaGGTAAAGCTTGCAGAGTTTTGGGATGAGATTATTGAAAAGTGGGAAGGTCATGAGTTGCCAAGTGATTTCGAATCCCAAAATAAGTGGATAAATGCTGGCAATACTTATAGAAAACTGGTAGAGCCTCTGGATATAGCATATTATTATCGCAATAACATCAATGGCAACTATCTTTCAGATGGAAGACACAATCGCCATAAAGTTCTTCAGAAATGGATGGAAGCGAAAGAAAAAGCTCGCGGTTCAAGAGGTCAACGACCCCGCACAAAGCGTGCATCCCTCACCCCGGACTCGTGCCTTTGGGCACATGTAGAAGAGGCTTGGAAAGACCTGAAAAATCTAAAACAAGGACAACACGAAAGCCTACAAAAGCTTGAAAAGTTTGAAGAGTATGTAACAAAGATGGAAAACGATCTCAGCATTTCTCGAGATGTTTTCTTCCAGGGAAGCAGGTTCAAGATGTGG

Fln Alignment:

sp_v1.1_unigene82059___QNDHAQLGLQKAGETENKYNTHVDRLAIELSVRQRTMAELEWYKEICEKEGGIGYYDTFKNQD-MKDISADTRKVKLAEFWDEIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIAYYYRNNINGNYLSDGRHNRHKVLQKWMEAKEKARGSRGQRPRTKRASLTPDSCLWAHVEEAWKDLKNLKQGQHESLQKLEKFEEYVTKMENDLSISRDVFFQGSRFKMW
A9NW04_______________QNDHAQFALRRAGETEDNYNTNVDKLAIELSLKQSSMAELEWYKERCEKEDGITYYDSFKKQNNRKDFRANVDRKKLCQFWDEIIEKWEGHELPSDFESQNKWINAGNTYRRLVEPLDIASYYRTNGNGNYLSDGRPNRHKILQRWMEAKEKTRSSRGQRPRTKRASLTADSCFWAHVEEAWKDLENLKQGQHQSLQKLEKFEEDVTNMENALTISPDVFLEGSSFIMW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
457		33		66	0.997452
496	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain