SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81691

Length: 437 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene81691
CGTCGTGACCTTGGCTGTCACTCATTACCGTCTGATTTTCGTTGTGACTATTCATTCTTCTTCATTCCATTACCCTTCGTTACGTCCGTACCCTTAACAGTAATCGCTGTCTGAGCAGATTATCAATGGAGCTACCGCGCGTGACAAAACGTTATTTAATGGGCATACTTGCGGCTATGGCTATTCTTCCAATATTGTCTCAAGCTCGCTGTAATTACCCGGCCATATTTAATTTTGGGGATTCAACCTCCGATACGGGTGCCGTCCACTTTGTGTTCCCGTATAAAATGGCTGCAGAGAATCCTCCCTATGGAGGAAAATTCTTCGGCAAACCCACAGGCAGATACAGCGACGGAAGACTCTCCATAGATTTCTTCGCCGAGGCACTGGGATTACAGTTTCTGAGCCCATATTTGCAGTCCGTGGGTTCAAATTTC

Ace file of the UniGene sp_v1.1_unigene81691

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATFXG1; ATFXG1 (alpha-fucosidase 1); alpha-L-fucosidase/ carboxylesterase	-	-	5.0e-20	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	lanatoside 15-o-acetylesterase	-	-	1.31399e-29	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-L-fucosidase.	EC:3.2.1.51	-	1.31399e-29	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		1.31399e-29	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	alpha-L-fucosidase activity	GO:0004560	Molecular Function	1.31399e-29	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMG5

Fln msg: Distance to subject end: 282 aas, your sequence is shorter than subject: 104 - 381

Fln protein: MELPRVTKRYLMGILAAMAILPILSQARCNYPAIFNFGDSTSDTGAVHFVFPYKMAAENPPYGGKFFGKPTGRYSDGRLSIDFFAEALGLQFLSPYLQSVGSNF

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTACCGTCTGATTTTCGTTGTGACTATTCATTCTTCTTCATTCCATTACCCTTCGTTACGTCCGTACCCTTAACAGTAATCGCTGTCTGAGCAGATTATCA_-_ATGGAGCTACCGCGCGTGACAAAACGTTATTTAATGGGCATACTTGCGGCTATGGCTATTCTTCCAATATTGTCTCAAGCTCGCTGTAATTACCCGGCCATATTTAATTTTGGGGATTCAACCTCCGATACGGGTGCCGTCCACTTTGTGTTCCCGTATAAAATGGCTGCAGAGAATCCTCCCTATGGAGGAAAATTCTTCGGCAAACCCACAGGCAGATACAGCGACGGAAGACTCTCCATAGATTTCTTCGCCGAGGCACTGGGATTACAGTTTCTGAGCCCATATTTGCAGTCCGTGGGTTCAAATTTC

Fln Alignment:

sp_v1.1_unigene81691___RYLMGILAAMAILPILSQARCNYPAIFNFGDSTSDTGAVHFVFPYKMAAENPPYGGKFFGKPTGRYSDGRLSIDFFAEALGLQFLSPYLQSVGSNF
B8LMG5_______________RFFLQALVLTALLPVIAYGKCDFPAIFNFGDSNSDTGGWHFAFPYQMLPDNAPYGRTFFGQPSYRYSDGRLSVDFLAQALGLPFISPFLQSVGSRF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
44		33	33	33	0.997752
49	33	33			0.997753
293	33			66	0.997453
300	66		33		0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain