SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81612

Length: 554 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene81612
CGTCGTGACCTTGGCTGTCACTCAGTTTGGACCAGACATTTGCGGTTACAGCACTAAGAAGGTTCATACCATTCTGTCATATAAAGGGAAGAACCATCCTATCAAAAAAGATGTCCCTTGTGAAACAGATCAGCTTACTCATGTTTATACATTCATTCTTCGACCGGATGCTACATATAGCATCCTCATTGACAACAAGGACAAACAGTCTGGGAGTTTGTACAAGGATTGGGACTTGTTGCCATCAAAAACATCAAGGACCCTAATGCCAAAAAGCCTGAGGATTGGGATGATAAGGAATACATTCCTGATCCAGATGCCACTAAGCCAGAGGATTGGAATGACGAGGAGGATGGTGAGTGGACAGCTCCAACTATTGCAAATCCAGAATATAAAGGACCGTGGAATCCTAAGAAAATTAAGAATCCTAACTACAAGGGTAAATGGAAGGCTCCAATAATTGACAATCCTGATTTCAAGGATGATCCAGAGCTCTATGTTTTCCCAATCTCAAATATCTAGGAATCGAGTTATGGCAGGTCAAGTCAGGAACA

Ace file of the UniGene sp_v1.1_unigene81612

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calreticulin n=2 Tax=Pinaceae RepID=Q9FYV2_PINTA	-	-	77%
FL-Next	tr=Calreticulin; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	calreticulin	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	76%
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	76%
Blast2go	response to salt stress	GO:0009651	Biological Process	76%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	76%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%
Blast2go	endosome	GO:0005768	Cellular Component	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FYV2

Fln msg: Overlapping hits, possible frame ERROR between 253 and 235, and overlapping frame ERROR between 507 and 501, Distance to subject end: 99 aas, your sequence is shorter than subject: 185 - 427

Fln protein: VVTLAVTQFGPDICGYSTKKVHTILSYKGKNHPIKKDVPCETDQLTHVYTFILRPDATYSILIDNKDKQSGSLYKDWxxxxxxxxKDPNAKKPEDWDDKEYIPDPDATKPEDWNDEEDGEWTAPTIANPEYKGPWNPKKIKNPNYKGKWKAPIIDNPDFKDDPELxxxxxLKYLGIELWQVKSGT

Protein Length: 186

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGGACCAGACATTTGCGGTTACAGCACTAAGAAGGTTCATACCATTCTGTCATATAAAGGGAAGAACCATCCTATCAAAAAAGATGTCCCTTGTGAAACAGATCAGCTTACTCATGTTTATACATTCATTCTTCGACCGGATGCTACATATAGCATCCTCATTGACAACAAGGACAAACAGTCTGGGAGTTTGTACAAGGATTGGxxxxxxxxxxxxxxxxxxxxxxxxAAGGACCCTAATGCCAAAAAGCCTGAGGATTGGGATGATAAGGAATACATTCCTGATCCAGATGCCACTAAGCCAGAGGATTGGAATGACGAGGAGGATGGTGAGTGGACAGCTCCAACTATTGCAAATCCAGAATATAAAGGACCGTGGAATCCTAAGAAAATTAAGAATCCTAACTACAAGGGTAAATGGAAGGCTCCAATAATTGACAATCCTGATTTCAAGGATGATCCAGAGCTCTAxxxxxxxxxxxxTCTCAAATATCTAGGAATCGAGTTATGGCAGGTCAAGTCAGGAACA

Fln Alignment:

sp_v1.1_unigene81612___FGPDICGYSTKKVHTILSYKGKNHPIKKDVPCETDQLTHVYTFILRPDATYSILIDNKDKQSGSLYKDWDxxxxxxIKDPNAKKPEDWDDKEYIPDP------------------DATKPEDWNDEEDGEWTAPTIANPEYKGPWNPKKIKNPNYKGKWKAPIIDNPDFKDDPELYVxxNLKYLGIELWQVKSGT
Q9FYV2_______________FGPDICGYSTKKVHTILSYKGK-HPIKKDVPCETDQLTHVYTFILRPDATYSILIDNTDKQSGSLYKDWDxxxxxxIKDPNAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDATKPEDWNDEEDGEWTAPTIANPEYKGPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPELYVxxNLKYLGIELWQVKSGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain