SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81356

Length: 529 nt

UniGene Fasta

>sp_v1.1_unigene81356
ATGGGCATGAGACAACATACAATTCCATCATGAAGTGTGACGTGGATATCAGAAAGGATCTGTATGGAAATATTTTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATTGTATGAGCAGGGAGATTACTGCCCTGGTCCCAATTGGTATGAGGAGGGAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTACCAAGGCTGAGTACGAGGAATCTGGTCTGTCAATTGTTCACAGAAAGTGTTTCTAATTTTCGGTGGCTTAGTAGTTTTTAGAGTTCCCAACTTCCCAAGCAGTATTGCAGTTATTATGAACTTGAGTAGGTGATCACGGTTATATGTTATTAGGAAGTCATTGTCAAAGTTGCGCAGTTTCACCATCGCAAATTTAGAGAGGCCCTCGAGATTGAGAAAAGGCCGAACAATCTTAATAGGGATGATGGCTGGAAGATTAGCAGTTGCT

Ace file of the UniGene sp_v1.1_unigene81356

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin (Fragment) n=52 Tax=Spermatophyta RepID=ACT_PINCO	-	-	9.80909e-45	88%
FL-Next	tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	86%
Blast2go	actin	-	-	5.60519e-45	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actin-like	IPR004000	-	5.60519e-45	91%
Blast2go	Actin, conserved site	IPR004001	-	5.60519e-45	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B7FFV7

Fln msg: atg_distance in limit (1-15): atg_distance = 9,

Fln protein: MKCDVDIRKDLYGNIFLSGGSTMFPGIADCMSREITALVPIGMRREIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYEESGLSIVHRKCF*

Protein Length: 97

Fln nts: ATGGGCATGAGACAACATACAATTCCATC_-_ATGAAGTGTGACGTGGATATCAGAAAGGATCTGTATGGAAATATTTTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATTGTATGAGCAGGGAGATTACTGCCCTGGTCCCAATTGGTATGAGGAGGGAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATTGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTACCAAGGCTGAGTACGAGGAATCTGGTCTGTCAATTGTTCACAGAAAGTGTTTCTAA___TTTTCGGTGGCTTAGTAGTTTTTAGAGTTCCCAACTTCCCAAGCAGTATTGCAGTTATTATGAACTTGAGTAGGTGATCACGGTTATATGTTATTAGGAAGTCATTGTCAAAGTTGCGCAGTTTCACCATCGCAAATTTAGAGAGGCCCTCGAGATTGAGAAAAGGCCGAACAATCTTAATAGGGATGATGGCTGGAAGATTAGCAGTTGCT

Fln Alignment:

sp_v1.1_unigene81356___HETTYNSIMKCDVDIRKDLYGNIFLSGGSTMFPGIADCMSREITALVPIGMRREIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYEESGLSIVHRKCF
B7FFV7_______________HETTYNSIMKCDVDIGKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK--IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain