SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81354

Length: 461 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene81354
CGTCGGACCTTGGCTGTCACTCACTGAAGGAAGCATTTCGGGTTTTCGACAAGGACCAGAATGGTTTCATATCTGCTGCCGAGCTACGCCACGTCATGACAAATGTCGTGACCTAAACTGTCACTGATGACGAAGTTGATGAGATGATTCGGGAGGCCGATGTGGATGGTGATGGACAAATTAACTATGAGGAATTTGTCAAAGTAATGATGGCCAAGTGATTTCCATCTTTAAGATCAACACGTTTTCTGTTTTTCATTTATCCATAAAGTTGGTGTTGCGCAGTCACTAGAATCTGGTTAGTGTGTCTTGTAGGCAGGATCCTTTTAGGACCTTAGCAGTCAGATTTGGATGAAAATTTGGGTACACCTTGCTATATGGAATCGTATAGGAAAGTTTGCTATCTGGTTATATAACACTTTGATTGTCCTGGGTGATATATTTGTTAGACAGAAGTTGAT

Ace file of the UniGene sp_v1.1_unigene81354

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin n=1 Tax=Zea mays RepID=B6SLW1_MAIZE	-	-	4.0e-19	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	calmodulin	-	-	4.67538e-19	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPT3

Fln msg: your sequence is shorter than subject: 73 - 149

Fln protein: SDLGCHSLKEAFRVFDKDQNGFISAAELRHVMTNVVT*TVTDDEVDEMIREADVDGDGQINYEEFVKVMMAK*

Protein Length: 74

Fln nts: CGTCGGACCTTGGCTGTCACTCACTGAAGGAAGCATTTCGGGTTTTCGACAAGGACCAGAATGGTTTCATATCTGCTGCCGAGCTACGCCACGTCATGACAAATGTCGTGACCTAAACTGTCACTGATGACGAAGTTGATGAGATGATTCGGGAGGCCGATGTGGATGGTGATGGACAAATTAACTATGAGGAATTTGTCAAAGTAATGATGGCCAAGTGA___TTTCCATCTTTAAGATCAACACGTTTTCTGTTTTTCATTTATCCATAAAGTTGGTGTTGCGCAGTCACTAGAATCTGGTTAGTGTGTCTTGTAGGCAGGATCCTTTTAGGACCTTAGCAGTCAGATTTGGATGAAAATTTGGGTACACCTTGCTATATGGAATCGTATAGGAAAGTTTGCTATCTGGTTATATAACACTTTGATTGTCCTGGGTGATATATTTGTTAGACAGAAGTTGAT

Fln Alignment:

sp_v1.1_unigene81354___LKEAFRVFDKDQNGFISAAELRHVMTNXXXXXXXXXXXXXMIREADVDGDGQINYEEFVKVMMAK
A9NPT3_______________LKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
107		40	20	40	1.0
108			50	50	1.0
109		25		75	0.996473
110	40	40		20	1.0
112			20	60	0.99255
113		20	80		0.995505
114	50		50		1.0
115	20	60	20		0.992551
116	40	40		20	1.0
117	20	20		40	0.994161
118	60			40	1.0
119	60		40		1.0
120	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain