SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81313

Length: 453 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene81313
ATGGGAGAGCTCCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGTTCTGAGACATGGATATGAAGAAAGCAATCCACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGGATCTGGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCAGCTCGTGCCAGTGTGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGCCCTTGCTATCGGGATATGAAGAATGCCAAGGGCAAACCCAAATGCCCTTGAATGAGCCGCATCGTACAGTTCAGATTGCTGAATATGAGCTAAATAAGTCGATCTGACAATACTATCGAAATGTTCTGAGTGGACTATAAC

Ace file of the UniGene sp_v1.1_unigene81313

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula] gb\|ACJ86188.1\| unknown [Medicago truncatula]	-	-	3.0e-12	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	gast1 protein	-	-	4.1033e-39	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gibberellin regulated protein	IPR003854	-	4.1033e-39	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP73

Fln msg: your sequence is shorter than subject: 87 - 111

Fln protein: MDMKKAIHACILLVMVFGLLDLVVCSVEDEINGFSLGQPQTLNKDRHLLAINCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP*

Protein Length: 88

Fln nts: ATGGGAGAGCTCCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGTTCTGAGAC_-_ATGGATATGAAGAAAGCAATCCACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGGATCTGGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCAGCTCGTGCCAGTGTGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGCCCTTGCTATCGGGATATGAAGAATGCCAAGGGCAAACCCAAATGCCCTTGA___ATGAGCCGCATCGTACAGTTCAGATTGCTGAATATGAGCTAAATAAGTCGATCTGACAATACTATCGAAATGTTCTGAGTGGACTATAAC

Fln Alignment:

sp_v1.1_unigene81313___MDMKKAIHACILLVMVFGLLDLVVCSVEDEINGFSLGQPQTLNKDRHLLAIN-------------------------CSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP
A9NP73_______________MEIKKAVHACILLVMLFGLLNLVVCSVEDEINGFSLGQPQTLHKDRHLLALNCGSACGKRCALASVKDRCLKYCGICCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain