SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81311

Length: 484 nt

UniGene Fasta

>sp_v1.1_unigene81311
GCAATGGAATCCTTGTGCTATTGAGCGTTTGTTATGTTATTTATTGCACTTAAAGCAATCAGTAACAATATTTTGACTCCTGATACCTGCGTCTGGTCTGTCTGTTCCTGGATATTTCTGTCCAGCTTTTGCCATAGCTGTCAAAACAATGAAGAAGGGAGAAAAAGTATTGTTGACAGTGAAGCCTCAGTATGGTTTTGGACATCAAGGACGCGAAGCAATTGGAAATGATGTTGCCGTTCCACCAAATGCAACATTGTTGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTTACTGATGATAAGAAAGTGCTGAAGAAAATCCTGAAGCAAGGAGAAGGTTATGAACGACCTAATGATGGGGCAGTGGTTAAAGTGAAATACACGGGGAAGTTAGAGGATGGCACCATATTTGAGGAAAAGGGATCTGATGAAGAACCATTTGAGTTTATGGCTGGAGAAGAGCAAGTTGTT

Ace file of the UniGene sp_v1.1_unigene81311

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FK506-binding protein n=2 Tax=Oryza sativa RepID=Q9XFE4_ORYSJ	-	-	4.00001e-41	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	peptidylprolyl isomerase	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	82%
Blast2go	response to heat	GO:0009408	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	cytoplasm	GO:0005737	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	0.0	82%
Blast2go	Peptidyl-prolyl cis-trans isomerase, FKBP-type	IPR023566	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUZ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 253 aas, your sequence is shorter than subject: 161 - 578

Fln protein: QWNPCAIERLLCYLLHLKQSVTIF*LLIPASGLSVPGYFCPAFAIAVKTMKKGEKVLLTVKPQYGFGHQGREAIGNDVAVPPNATLLVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVVKVKYTGKLEDGTIFEEKGSDEEPFEFMAGEEQVV

Protein Length: 162

Fln nts: GCAATGGAATCCTTGTGCTATTGAGCGTTTGTTATGTTATTTATTGCACTTAAAGCAATCAGTAACAATATTTTGACTCCTGATACCTGCGTCTGGTCTGTCTGTTCCTGGATATTTCTGTCCAGCTTTTGCCATAGCTGTCAAAACAATGAAGAAGGGAGAAAAAGTATTGTTGACAGTGAAGCCTCAGTATGGTTTTGGACATCAAGGACGCGAAGCAATTGGAAATGATGTTGCCGTTCCACCAAATGCAACATTGTTGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTTACTGATGATAAGAAAGTGCTGAAGAAAATCCTGAAGCAAGGAGAAGGTTATGAACGACCTAATGATGGGGCAGTGGTTAAAGTGAAATACACGGGGAAGTTAGAGGATGGCACCATATTTGAGGAAAAGGGATCTGATGAAGAACCATTTGAGTTTATGGCTGGAGAAGAGCAAGTTGTT

Fln Alignment:

sp_v1.1_unigene81311___GYFCPAFAIAVKTMKKGEKVLLTVKPQYGFGHQGREAIGNDVAVPPNATLLVDLELVSWXXXXXXXXXXXXXXXILKQGEGYERPNDGAVVKVKYTGKLEDGTIFEEKGSDEEPFEFMAGEEQVV
A9NUZ0_______________GYFCPAFAKAVKTMKKGEKVLLTVKPQYGFGHKGRQAIGNDVAVPPNATLMVDLELVSWKVVDEVTDDKKVLKKILKQGEGYERPNDGAVAKVKYTGKLEDGTVFEKKGSDEEPFEFMTGEEQVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain