SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81298

Length: 509 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene81298
ATTTTCCAAAGTTCTGGCTGGATTTTGGGAAAAATTGACCAGAAAATCTACCCAAAAAGGGCAAAGATGTTGCCTCCCTAGACTACTGCATTAAGGAAGCATAACATCAATACAGAGAACCTAAAATCTGGTTGTAACTCGTAGCTAGTTAAGAGGTGTATCGTCGTGACCTTGGCTGTCACTCATTCTTATTGATCAGGGTGAAGAAGATAAGTTTCTACACAACCAGCTGCTACCCCATAAATTTGAGGAGGCGTGTAAGATAGCTAATGTTCCTTTGACTTTGCGGTTGCAGCCGGGATATGATCATTCATTCTTCTTCATTGCCACCTTTATAGATGAACACATTGAGCATCACTCAAAAGTTCTTCATGCTTCATGAAAAACTCTGGACGTTTGACATAAATAGAGGGAGAGAGGGATCTGGATATTATTGTCATTAGATTATTATGGTTATATTGTGAATACGTGGCGCATAAGTAGTTTTAAGCTCTAGCATGAGTGGACTT

Ace file of the UniGene sp_v1.1_unigene81298

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-formylglutathione hydrolase (EC:3.1.1.1); K01070 S-formylglutathione hydrolase [EC:3.1.2.12]	-	-	2.0e-17	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	esterase d	-	-	5.58811e-31	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	S-formylglutathione hydrolase.	EC:3.1.2.12	-	5.58811e-31	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Methane metabolism	00680		5.58811e-31	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	S-formylglutathione hydrolase.	EC:3.1.2.12	-	2.0e-17	61%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Methane metabolism	00680		2.0e-17	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	S-formylglutathione hydrolase activity	GO:0018738	Molecular Function	5.58811e-31	85%
Blast2go	apoplast	GO:0048046	Cellular Component	5.58811e-31	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 127 - 283

Fln protein: FSKVLAGFWEKLTRKSTQKGQRCCLPRLLH*GSITSIQRT*NLVVTRS*LRGVSS*PWLSLILIDQGEEDKFLHNQLLPHKFEEACKIANVPLTLRLQPGYDHSFFFIATFIDEHIEHHSKVLHAS*

Protein Length: 128

Fln nts: ATTTTCCAAAGTTCTGGCTGGATTTTGGGAAAAATTGACCAGAAAATCTACCCAAAAAGGGCAAAGATGTTGCCTCCCTAGACTACTGCATTAAGGAAGCATAACATCAATACAGAGAACCTAAAATCTGGTTGTAACTCGTAGCTAGTTAAGAGGTGTATCGTCGTGACCTTGGCTGTCACTCATTCTTATTGATCAGGGTGAAGAAGATAAGTTTCTACACAACCAGCTGCTACCCCATAAATTTGAGGAGGCGTGTAAGATAGCTAATGTTCCTTTGACTTTGCGGTTGCAGCCGGGATATGATCATTCATTCTTCTTCATTGCCACCTTTATAGATGAACACATTGAGCATCACTCAAAAGTTCTTCATGCTTCATGA___AAAACTCTGGACGTTTGACATAAATAGAGGGAGAGAGGGATCTGGATATTATTGTCATTAGATTATTATGGTTATATTGTGAATACGTGGCGCATAAGTAGTTTTAAGCTCTAGCATGAGTGGACTT

Fln Alignment:

sp_v1.1_unigene81298___ILIDQGEEDKFLHNQLLPHKFEEACKIANVPLTLRLQPGYDHSFFFIATFIDEHIEHHSKVLHAS
A9NNG6_______________ILIDQGEEDKFLHNQLLPHKFEEACKIANVPLTLRLQPGYDHSFFFIATFIDEHIEHHSKALHAS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
166			75	25	0.99649
167		25		75	0.99649
168		25	75		0.99649
170		75	25		0.99649
174		33	66		0.997452
175		33	66		0.997452
176	33	66			0.997452
177	33			66	0.997452
179			33	66	0.997452
180		66		33	0.997452
186	33			66	0.997452
188		66		33	0.997452
190		33		66	0.997452
198	33			66	0.997452
199	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain