SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81254

Length: 429 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene81254
CGTCGTGACCTTGGCTGTCACTCATGCAAGCAAGGAAGTAGTTTGGTTACAGAGATTGTGTTCAAGTATGGGGTTAGTACAACGAGATATAAGGATAGATTGTCACAGCTAAAGTGTAATTTTCTTAGCAAAGAACGTTGCTTATCATTCAAAGACAAAGCACATTGATGTTTGGTATCACTTTGTGAGGGATATGGTTGAGGACAAAAAGGTGTTGCTGGTAAAGTTGGACACTTTAAAGAATAATGCAAATGCATTGATGAAGTCTGTGAGAATTGAGAAGTTTTCTTGGTATATAGAAACAATGGGTGTTGTAGGGTTGGACCAATGACTAAGCTCTCTTGTGACCCCTTGTGTGGAAATAGAACAAGTGGGAGAATGTTGGGTGTGTGTTATATTATTTCCATGAATAGCCCCATGCACAAAGCA

Ace file of the UniGene sp_v1.1_unigene81254

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	1.0e-14	38%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	61%
Blast2go	gag-pol polyprotein	-	-	3.17236e-15	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 110 - 542

Fln protein: VVTLAVTHASKEVVWLQRLCSSMGLVQRDIRIDCHS*SVIFLAKNVAYHSKTKHIDVWYHFVRDMVEDKKVLLVKLDTLKNNANALMKSVRIEKFSWYIETMGVVGLDQ*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGCAAGCAAGGAAGTAGTTTGGTTACAGAGATTGTGTTCAAGTATGGGGTTAGTACAACGAGATATAAGGATAGATTGTCACAGCTAAAGTGTAATTTTCTTAGCAAAGAACGTTGCTTATCATTCAAAGACAAAGCACATTGATGTTTGGTATCACTTTGTGAGGGATATGGTTGAGGACAAAAAGGTGTTGCTGGTAAAGTTGGACACTTTAAAGAATAATGCAAATGCATTGATGAAGTCTGTGAGAATTGAGAAGTTTTCTTGGTATATAGAAACAATGGGTGTTGTAGGGTTGGACCAATGA___CTAAGCTCTCTTGTGACCCCTTGTGTGGAAATAGAACAAGTGGGAGAATGTTGGGTGTGTGTTATATTATTTCCATGAATAGCCCCATGCACAAAGCA

Fln Alignment:

sp_v1.1_unigene81254___LAVTHASKEVVWLQRLCSSMGLVQRDIRIDCHS*SVIFLAKNVAYHSKTKHIDV
Q9M5J7_______________MVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQSAIFMAKNPAYDSKTNHIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain