SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81182

Length: 406 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene81182
CGTCGTGACCTTGGCTGTCACTCAGGTGATTGAGGGGTGCCTTAAGGCTGGGATGTCTGTTGCTCGTTTTGATTTCTCTGGGGGAGACAATGAATATCACCAAGAAACTCTTGAAAATCTGAAGATTGCTGCGAAAGGGGTTAATAAACTTTGTGCTACACTAAAGAAAGGGGATACCATTTTTGTTGGTCAATATCTCTTTACAGGAAGTGAGACCACTTCTGTCTGGCTTGAGGTTGTAGAGATTAAAGATGAAGATATAGTTTGCTGTGTCAAAAACAGTGCAACTCTTGCTGGTTCATTATTTACAATGCATGCCACTCAAGTTCATATTGATCTTCCAACATTGAGCGACACAGATAAGCATAATATTGCAACTTGGGGATTCGCAACAACATTGACTTTC

Ace file of the UniGene sp_v1.1_unigene81182

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate kinase n=1 Tax=Picea sitchensis RepID=A9NUL1_PICSI	-	-	59%
FL-Next	sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	pyruvate kinase	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	58%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	58%

Source	InterPros	Term	Type	Identity
Blast2go	Pyruvate kinase	IPR001697	-	58%
Blast2go	Pyruvate kinase, barrel	IPR015793	-	58%
Blast2go	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUL1

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 135 - 527

Fln protein: VVTLAVTQVIEGCLKAGMSVARFDFSGGDNEYHQETLENLKIAAKGVNKLCATLKKGDTIFVGQYLFTGSETTSVWLEVVEIKDEDIVCCVKNSATLAGSLFTMHATQVHIDLPTLSDTDKHNIATWGFATTLTF

Protein Length: 136

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGATTGAGGGGTGCCTTAAGGCTGGGATGTCTGTTGCTCGTTTTGATTTCTCTGGGGGAGACAATGAATATCACCAAGAAACTCTTGAAAATCTGAAGATTGCTGCGAAAGGGGTTAATAAACTTTGTGCTACACTAAAGAAAGGGGATACCATTTTTGTTGGTCAATATCTCTTTACAGGAAGTGAGACCACTTCTGTCTGGCTTGAGGTTGTAGAGATTAAAGATGAAGATATAGTTTGCTGTGTCAAAAACAGTGCAACTCTTGCTGGTTCATTATTTACAATGCATGCCACTCAAGTTCATATTGATCTTCCAACATTGAGCGACACAGATAAGCATAATATTGCAACTTGGGGATTCGCAACAACATTGACTTTC

Fln Alignment:

sp_v1.1_unigene81182___QVIEGCLKAGMSVARFDFSGGDNEYHQETLENLKIAAKGVNKLCA----------------------------------------------------TLKKGDTIFVGQYLFTGSETTSVWLEVVEIKDEDIVCCVKNSATLAGSLFTMHATQVHIDLPTLSDTDKHNIATWGFATTLTF
A9NUL1_______________EVIEGCLKAGMSVARFDFSGGDNDYHQETLENLKIAVKEIKKLCAIMLDTVGPELQVFNRSEEPIVLEIDAFVTLTPDQSKEASSEVLPINYAGLAKTVTKGDTIFVGQYLFTGSETTSVWLEVAEIKDQDVVCCVKNSATLAGALFTMHISQVHIDLPTLSDTDKHVIATWGVRNNIDF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain