SustainPineDB

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Assembly info
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SNPs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81167

Length: 301 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene81167
CGTCGTGACCTTGGCTGTCACTCAACTAATATCTTCGTCGTGGCCTTGGCTCGTCGTGCACAATTCTATTTGTGGTTCGACCCAACTCTGGATTTCCACACTTACTCTGTGCTCTGGACACCAAACCAAATCATATTATCTGTAGATGGGACTCCTGTTCGAGTGTTCAAGAACAGGGAGAAAGAGCTGGGTAACAATTTTCATTTTCCGAATAGCCAGGCAATGAGGATATACTCCAGCCTTTGGAATGCAGATGACTGGGCAACCAGAGGTGGGCTCATCAAGAGCGACTGGAGTAAAG

Ace file of the UniGene sp_v1.1_unigene81167

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	4.0e-31	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	xyloglucan endotransglycosylase	-	-	4.10932e-39	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	4.10932e-39	77%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	4.10932e-39	77%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	4.10932e-39	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNC7

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 100 - 202

Fln protein: RRDLGCHSTNIFVVALARRAQFYLWFDPTLDFHTYSVLWTPNQIILSVDGTPVRVFKNREKELGNNFHFPNSQAMRIYSSLWNADDWATRGGLIKSDWSK

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTAATATCTTCGTCGTGGCCTTGGCTCGTCGTGCACAATTCTATTTGTGGTTCGACCCAACTCTGGATTTCCACACTTACTCTGTGCTCTGGACACCAAACCAAATCATATTATCTGTAGATGGGACTCCTGTTCGAGTGTTCAAGAACAGGGAGAAAGAGCTGGGTAACAATTTTCATTTTCCGAATAGCCAGGCAATGAGGATATACTCCAGCCTTTGGAATGCAGATGACTGGGCAACCAGAGGTGGGCTCATCAAGAGCGACTGGAGTAAAG

Fln Alignment:

sp_v1.1_unigene81167___TNIFVVALARRAQ-FYLWFDPTLDFHTYSVLWTPNQIILSVDGTPVRVFKNREKELGN---NFHFPNSQAMRIYSSLWNADDWATRGGLIKSDWSK
B8LNC7_______________TNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTPNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKSQAMRIYSTLWNADDWATRGGLVKTDWTK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
60	33	33		33	0.997752
61			66	33	0.997476
64		33	33		0.997753
192		66		33	0.997476
292		33	66		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain