SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81087

Length: 478 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene81087
TTTTTTTATTCCGTTCATTTTAAAGCAGGCTTCTTGATATTCTCAACATTGTGTGCCTCTCAACGAAGTGAAATATGGAGAACCCTTCAGAAGACTCTCTGCAAACAGTTGCTGCACGGGCGCCGATCACTGCACAGCGCAGATTGAACACCGACCTGCAAAACCAAATGGCAAGCCCATATTTAGCAAGAGCTCTGGAAGCGGTGGATCCGGAGCATATAAATGGGTCCACGGATCACAAAAACAACGACATGAGCGTTCTCCAGCAACATGTGGCGTTTTTCGATATCGACAAGGACGGAATTATTTATCCCTGCGAAACTTACAGAGGCTTTCGTGCCCTAGGGTTTAATGTCCTCTTTTCGCTATTCTCAGCAGTGTTTATCCACGTATTGTTGAGCTACTATACTCTTCCGGGATGGATACCATCACTGAAATTTCCATTATACATTGAGAACATCCACAGAGCAAAGCATGG

Ace file of the UniGene sp_v1.1_unigene81087 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caleosin n=1 Tax=Cycas revoluta RepID=B8XX15_CYCRE	-	-	9.94922e-44	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	embryo-specific protein 1	-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Heme oxygenase.	EC:1.14.99.3	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		0.0	76%
Blast2go	Glycerol-3-phosphate O-acyltransferase.	EC:2.3.1.15	-	0.0	76%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	76%
Blast2go	Glycerophospholipid metabolism	00564	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylglycerol biosynthetic process	GO:0006655	Biological Process	76%
Blast2go	lipid particle organization	GO:0034389	Biological Process	76%
Blast2go	oxylipin biosynthetic process	GO:0031408	Biological Process	76%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	76%
Blast2go	heme oxygenase (decyclizing) activity	GO:0004392	Molecular Function	76%
Blast2go	linoleic acid epoxygenase activity	GO:0071614	Molecular Function	76%
Blast2go	glycerol-3-phosphate O-acyltransferase activity	GO:0004366	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Caleosin	IPR007736	-	0.0	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P193

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 134 - 242

Fln protein: MENPSEDSLQTVAARAPITAQRRLNTDLQNQMASPYLARALEAVDPEHINGSTDHKNNDMSVLQQHVAFFDIDKDGIIYPCETYRGFRALGFNVLFSLFSAVFIHVLLSYYTLPGWIPSLKFPLYIENIHRAKH

Protein Length: 135

Fln nts: TTTTTTTATTCCGTTCATTTTAAAGCAGGCTTCTTGATATTCTCAACATTGTGTGCCTCTCAACGAAGTGAAAT_-_ATGGAGAACCCTTCAGAAGACTCTCTGCAAACAGTTGCTGCACGGGCGCCGATCACTGCACAGCGCAGATTGAACACCGACCTGCAAAACCAAATGGCAAGCCCATATTTAGCAAGAGCTCTGGAAGCGGTGGATCCGGAGCATATAAATGGGTCCACGGATCACAAAAACAACGACATGAGCGTTCTCCAGCAACATGTGGCGTTTTTCGATATCGACAAGGACGGAATTATTTATCCCTGCGAAACTTACAGAGGCTTTCGTGCCCTAGGGTTTAATGTCCTCTTTTCGCTATTCTCAGCAGTGTTTATCCACGTATTGTTGAGCTACTATACTCTTCCGGGATGGATACCATCACTGAAATTTCCATTATACATTGAGAACATCCACAGAGCAAAGCATGG

Fln Alignment:

sp_v1.1_unigene81087___MENPSEDSLQTVAARAPITAQRRLNTDLQNQMASPYLARALEAVDPEHINGSTDHKNNDMSVLQQHVAFFDIDKDGIIYPCETYRGFRALGFNVLFSLFSAVFIHVLLSYYTLPGWIPSLKFPLYIENIHRAKH
A9P193_______________MASPSEDSLQTVAARAPITAQRRLNIHLQEQMPKPYLARALEAVDPEHINGSTDYNNNDMSVLQQHVAFFDKDKDGIIYPCDTYKGFRAIGFNVLFSLFVAVIINVAFSYYTLPGWIPSLKFPVYVDNIHRAKH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
358		66		33	0.997476
417			33	66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain