SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81083

Length: 518 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene81083
CAAGTTCCATACCTCTGCTGCAAAAGGGATTGGGGAAAACTGGCCCATTTCAGGGACTGCACTGTTCAAGCTCCTTGCCTTCTGATAATGGGGAACAAAGATTATGAAATGAACTTTGTAGGGACGGAGTATGATATCGATAGTGAAATGATCAAGTCTGACGTGCCCAATCTGGAGATCAAATATATTTCAGAAGGAAGCCATTTTGTTCAGGAACAGTTTCCAGAGGAAGTGAATAAGCTTCTCGTTGGCTTCCTGAATCAGCACTTGTGAGCAGTAGATATAGAGAATAATTGGTGATTACAGAATATTGAGATTATGAAACTTTTTAAAGTTATATGTTTTGAAATATATATATCAAATGTGGTTCATTCTGGGTTTTTAAAGTCTCGCAAGGGGTACTTTTGTTTGAGTTGTATGGTTTTTAAAAGTTGGATTGTAATCTCAGATTTCTCTCCTAATATATATAAGAAATGTATAATGATGTAATTATAATTCATTATTCATACGTTTATCAC

Ace file of the UniGene sp_v1.1_unigene81083 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative epoxide hydrolase (Fragment) n=9 Tax=Pinus RepID=B8RHJ0_PINSY	-	-	6.0e-33	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	epoxide hydrolase	-	-	2.98902e-35	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACP4

Fln msg: your sequence is shorter than subject: 91 - 321

Fln protein: QVPYLCCKRDWGKLAHFRDCTVQAPCLLIMGNKDYEMNFVGTEYDIDSEMIKSDVPNLEIKYISEGSHFVQEQFPEEVNKLLVGFLNQHL*

Protein Length: 92

Fln nts: CAAGTTCCATACCTCTGCTGCAAAAGGGATTGGGGAAAACTGGCCCATTTCAGGGACTGCACTGTTCAAGCTCCTTGCCTTCTGATAATGGGGAACAAAGATTATGAAATGAACTTTGTAGGGACGGAGTATGATATCGATAGTGAAATGATCAAGTCTGACGTGCCCAATCTGGAGATCAAATATATTTCAGAAGGAAGCCATTTTGTTCAGGAACAGTTTCCAGAGGAAGTGAATAAGCTTCTCGTTGGCTTCCTGAATCAGCACTTGTGA___GCAGTAGATATAGAGAATAATTGGTGATTACAGAATATTGAGATTATGAAACTTTTTAAAGTTATATGTTTTGAAATATATATATCAAATGTGGTTCATTCTGGGTTTTTAAAGTCTCGCAAGGGGTACTTTTGTTTGAGTTGTATGGTTTTTAAAAGTTGGATTGTAATCTCAGATTTCTCTCCTAATATATATAAGAAATGTATAATGATGTAATTATAATTCATTATTCATACGTTTATCAC

Fln Alignment:

sp_v1.1_unigene81083___QVPYLCCKRDWGKLAHFRDCTVQAPCLLIMGNKDYEMNFVGTEYDIDSEMIKSDVPNLEIKYISEGSHFVQEQFPEEVNKLLVGFLNQHL
D5ACP4_______________QVPYLSSTRDWGRLAHLRDYTIQAPSLLIMGNKDYAMKYPGMEYHINSETLKSDVPNLEIKYLSEGSHFVQEQFPEEVNKLLLGFLNQHL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain