SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene81074

Length: 446 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene81074
CGTCGTGACCTTGGCTGTCACTCAACTTTACCCATCTTTAGTTTGGAAGACATAGAAGAGGGTGTTGAAGGATTTGACGATGAGAAATCTTTTCTTACGTCGTGACCTTGGCTGTCACTCAAGATTTGGTCAATCACAGGTGCTCATTCAATCTACTCTCATGGAAAATGGTGGTCTTCCACAATCTGCTGATCCTGCTTCTTTATTGAAAGAAGCTATTCATGTTATCAGTTGTGGATATGAAAACAAATCAGAATGGGGAAAAGAGATTGGGTGGATTTACGGTTCAGTCACTGAAGACATTTTGACTGGGTTTAAAATGCATGCTCGAGGCTGGATTTCAATCTACTGCATACCCAAACGCCCTGCATTCAAAGGATCGGCACCAATCAATCTTTCAGATCGTTTGAATCAAGTGCTCCGATGGGCCCTTGGTTCTGTTGAAA

Ace file of the UniGene sp_v1.1_unigene81074 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase A catalytic subunit 6 [UDP-forming], putative (EC:2.4.1.12); K10999 cellulose synthase A [EC:2.4.1.12]	-	-	86%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	80%
Blast2go	cellulose synthase	-	-	89%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q6GUG6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 251 aas, your sequence is shorter than subject: 148 - 1084

Fln protein: VVTLAVTQLYPSLVWKT*KRVLKDLTMRNLFLRRDLGCHSRFGQSQVLIQSTLMENGGLPQSADPASLLKEAIHVISCGYENKSEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCIPKRPAFKGSAPINLSDRLNQVLRWALGSVE

Protein Length: 149

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTACCCATCTTTAGTTTGGAAGACATAGAAGAGGGTGTTGAAGGATTTGACGATGAGAAATCTTTTCTTACGTCGTGACCTTGGCTGTCACTCAAGATTTGGTCAATCACAGGTGCTCATTCAATCTACTCTCATGGAAAATGGTGGTCTTCCACAATCTGCTGATCCTGCTTCTTTATTGAAAGAAGCTATTCATGTTATCAGTTGTGGATATGAAAACAAATCAGAATGGGGAAAAGAGATTGGGTGGATTTACGGTTCAGTCACTGAAGACATTTTGACTGGGTTTAAAATGCATGCTCGAGGCTGGATTTCAATCTACTGCATACCCAAACGCCCTGCATTCAAAGGATCGGCACCAATCAATCTTTCAGATCGTTTGAATCAAGTGCTCCGATGGGCCCTTGGTTCTGTTGAAA

Fln Alignment:

sp_v1.1_unigene81074___LRRDLGCHSRFGQSQVLIQSTLMENGGLPQSADPASLLKEAIHVISCGYENKSEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCIPKRPAFKGSAPINLSDRLNQVLRWALGSVE
Q6GUG6_______________LMSQLDFEKKFGQSSAFVQSTLMENGGVPQTANPAELLKEAIHVISCGYEDKTEWGKELGWIYGSVTEDILTGFKMHTRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
329			66	33	0.997471
330	66			33	0.997467
341	66	33			0.997476
342		33	66		0.997476
345		66		33	0.997476
346	66		33		0.997476
347		66	33		0.997476
351	33		66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain