SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80964

Length: 713 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene80964 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor 1 n=111 Tax=Viridiplantae RepID=ARF1_ARATH	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	adp-ribosylation factor	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	95%
Blast2go	vacuole	GO:0005773	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%
Blast2go	Golgi-associated vesicle	GO:0005798	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTP-binding protein domain	IPR005225	-	95%
Blast2go	Small GTPase superfamily, SAR1-type	IPR006687	-	95%
Blast2go	ADP-ribosylation factor	IPR006688	-	95%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	95%

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
276		20		80	0.995493
450	88			11	0.92373
453		87	12		0.992554
454		87		12	0.992554
455		87	12		0.992554
456	12			87	0.992554
457		12	87		0.992554
461		12		87	0.992554
465			11	88	0.923646
468	11			88	0.923646
469		11	88		0.923646
472	88	11			0.923646
497		85	14		0.993533
499	14			85	0.993533
500		14	85		0.993533
501	14			85	0.993533
505	12		87		0.992556
507		87	12		0.992555
508		87	12		0.992555
512	87		12		0.992555
515	87		12		0.992555
523		83		16	0.994512
532		16		83	0.994512
533	14		85		0.993536
535			14	85	0.993534
536	85		14		0.993534
538		14		85	0.993534
541	14			71	0.984337
542		14		85	0.993534
568		60		40	1.0
569		60	40		1.0
573	66		33		1.0
577	50		50		1.0
578		50		50	1.0
579	50			50	1.0
581		50	50		1.0
582		50	50		1.0
588	40	40		20	1.0
589	60		40		1.0
590		60		40	1.0
591	40		60		1.0
594	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain