SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80939

Length: 334 nt

UniGene Fasta

>sp_v1.1_unigene80939
TGGTTACGGCGGTGGTCAAACAGCAGGAGGGTGTGGTGGTCTTGGTGGAGGATCTTTGTATGGAGTACCGCCGACTTCGGGAGCTTCTCAATCGGGTGGATTTCCAGAAGGAAGCCATTATCCATTGTCATCCTACCAAAATCAGCATCAGCAATCAGGGCAATCACCAGCACCAAGAGTTCCCGGAGGAGGGGTATATCAAGGCGTGCCACCCTTTTACTCTGTCTAGATCCCAGGCTTGTGATTCTATCTTTCTCAAATTGCCCGCTGACTTCAGCTGTTCTAATCCTTATTTAAACTCGTGTTGTCACGAGGGGAGAGGCCAGTGACCCAC

Ace file of the UniGene sp_v1.1_unigene80939

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	2.0e-14	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	unknown [Picea sitchensis]	-	-	4.55528e-14	98%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTL4

Fln msg: your sequence is shorter than subject: 76 - 446

Fln protein: GYGGGQTAGGCGGLGGGSLYGVPPTSGASQSGGFPEGSHYPLSSYQNQHQQSGQSPAPRVPGGGVYQGVPPFYSV*

Protein Length: 77

Fln nts: TGGTTACGGCGGTGGTCAAACAGCAGGAGGGTGTGGTGGTCTTGGTGGAGGATCTTTGTATGGAGTACCGCCGACTTCGGGAGCTTCTCAATCGGGTGGATTTCCAGAAGGAAGCCATTATCCATTGTCATCCTACCAAAATCAGCATCAGCAATCAGGGCAATCACCAGCACCAAGAGTTCCCGGAGGAGGGGTATATCAAGGCGTGCCACCCTTTTACTCTGTCTAG___ATCCCAGGCTTGTGATTCTATCTTTCTCAAATTGCCCGCTGACTTCAGCTGTTCTAATCCTTATTTAAACTCGTGTTGTCACGAGGGGAGAGGCCAGTGACCCAC

Fln Alignment:

sp_v1.1_unigene80939___VPPTSGASQSGGFPEGSHYPLSSYQNQHQQSGQSPAXXXXXXXXXXXXXXFYSV
C0PTL4_______________VPPTSGASQSGGYPEGSHYPLSSYQNQHQQSGQSPAPRVPGGGVYQGGPPFYSV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain