SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80855

Length: 1747 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene80855

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl hydrolase-like protein (Fragment) n=5 Tax=Picea sitchensis RepID=E0Z5X8_PICSI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	glycosyl hydrolase-like protein	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	85%
Blast2go	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	85%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	85%
Blast2go	Glycoside hydrolase, family 3, active site	IPR019800	-	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 582 - 631

Fln protein: MGIPTNPLRLSSTGQSVVDSIALLRLASRMDSIWCLFLFLVAFCKCAEAAQYTLYKDPSQPISARVDDLLARMSLEEKIGQMTQIERSVATPDVMTNYYIGSVLSGGGSEPAPRASPATWMNMVDGLQKGAMATRLQIPMIYGIDAVHGHNNVYGATIFPHNVGLGATRDPDLVKRIGAATALEVRSTGIQYTFAPCVAVCRDPRWGRCYESYSEDPTIVKAMTEIIIGLQGQPPANFTKGVPYVAGQSNIAACAKHFVGDGGTTQGVDESNTVSDYKQLVNIHMTPYFDAIAKGVSTIMISYSSWNGQKMHANRFLISHVLKKQLSFKGFVISDWQGIDRITTPPNANYSLSVLESVGAGIDMVMVPYNFADFINDLTSQVKGGFIPMSRINDAVQRILTVKFTMGLFEHPMGDPSLANQLGSKEHRDLAREAVRKSLVLLKNGKSASQPLLPLDKNAPKILVAGTHPDNLGYQCGGWTIEWQGLSGNITIGTTILSAIQSAVSSSTEVVYQQNPDANYVKEQGFSYAIVVVGEPPYAEMFGDNLNLTIPLGGGDTINNVCGSLKCLVILISGRPLVIEPY

Protein Length: 583

Fln nts: _-_ATGGGGATCCCAACCAACCCACTTCGCCTCAGTTCAACTGGGCAGAGTGTAGTGGACTCTATAGCTCTCCTCAGATTGGCGAGCAGAATGGATTCAATATGGTGTTTGTTTCTGTTTCTTGTGGCTTTCTGCAAATGTGCAGAAGCCGCCCAGTATACTCTGTACAAGGACCCATCTCAACCCATCTCTGCTCGCGTGGACGACTTGTTGGCACGGATGTCTCTCGAAGAGAAGATCGGACAGATGACCCAGATTGAAAGATCAGTTGCCACTCCAGATGTTATGACAAATTACTATATTGGGAGTGTGCTGAGCGGAGGAGGCAGTGAGCCTGCACCTCGAGCATCTCCGGCCACATGGATGAACATGGTAGATGGTCTCCAGAAGGGTGCCATGGCCACTAGGCTTCAAATTCCTATGATATATGGGATTGACGCTGTTCATGGTCACAACAATGTCTATGGGGCTACCATCTTCCCTCACAATGTTGGGCTTGGAGCTACCAGGGATCCCGATCTGGTTAAAAGAATTGGAGCTGCCACAGCTCTGGAAGTTCGATCTACTGGCATTCAATACACATTTGCTCCATGTGTTGCTGTTTGCAGAGATCCTCGATGGGGGCGCTGCTATGAGAGCTACAGCGAGGATCCAACAATAGTCAAGGCCATGACAGAGATTATCATTGGTCTGCAGGGGCAGCCTCCTGCTAATTTTACAAAGGGGGTGCCGTATGTAGCTGGACAGTCAAATATTGCAGCGTGTGCTAAGCACTTTGTGGGCGATGGTGGAACAACCCAGGGTGTCGATGAGAGTAACACTGTCAGCGATTATAAACAATTAGTCAACATCCACATGACCCCCTATTTTGATGCCATTGCCAAAGGAGTCTCCACCATTATGATTTCTTATTCCAGTTGGAATGGACAGAAGATGCACGCTAACCGTTTTCTCATTTCTCATGTTCTAAAGAAGCAACTTAGCTTCAAGGGCTTTGTTATTTCAGATTGGCAAGGTATTGACAGAATAACTACCCCACCGAATGCTAATTATTCTTTGTCAGTCCTTGAAAGTGTGGGTGCAGGGATTGACATGGTGATGGTTCCCTACAATTTTGCTGACTTTATTAACGACCTGACTTCGCAAGTTAAGGGTGGCTTCATACCTATGAGTAGAATAAATGATGCAGTTCAAAGAATTTTGACAGTAAAATTCACCATGGGACTCTTTGAACATCCTATGGGCGATCCAAGCTTAGCCAACCAACTTGGCAGCAAAGAGCACAGGGACTTGGCAAGAGAAGCTGTTAGGAAATCTTTGGTATTGTTGAAAAATGGAAAGTCTGCCAGCCAGCCTTTGCTTCCTTTGGATAAGAATGCTCCCAAGATTCTTGTTGCAGGGACTCATCCTGACAATCTAGGTTATCAATGTGGTGGATGGACGATAGAATGGCAAGGTTTAAGTGGAAACATAACCATAGGAACAACAATTCTTTCAGCAATCCAATCTGCTGTTAGCTCCTCTACCGAGGTTGTTTATCAGCAAAATCCAGATGCAAACTATGTCAAAGAACAAGGGTTTTCATATGCTATTGTGGTTGTGGGTGAGCCACCTTATGCAGAAATGTTTGGGGATAATCTCAATTTGACCATTCCTTTAGGCGGAGGTGATACGATTAACAATGTCTGTGGCTCCCTGAAATGCCTTGTAATATTGATATCTGGAAGGCCACTTGTTATCGAACCTTACC

Fln Alignment:

sp_v1.1_unigene80855___LASRMDSIWCLFLFLVAFCKCAEAAQYTLYKDPSQPISARVDDLLARMSLEEKIGQMTQIERSVATPDVMTNYYIGSVLSGGGSEPAPRASPATWMNMVDGLQKGAMATRLQIPMIYGIDAVHGHNNVYGATIFPHNVGLGATRDPDLVKRIGAATALEVRSTGIQYTFAPCVAVCRDPRWGRCYESYSEDPTIVKAMTEIIIGLQGQPPANFTKGVPYVAGQSNIAACAKHFVGDGGTTQGVDESNTVSDYKQLVNIHMTPYFDAIAKGVSTIMISYSSWNGQKMHANRFLISHVLKKQLSFKGFVISDWQGIDRITTPPNANYSLSVLESVGAGIDMVMVPYNFADFINDLTSQVKGGFIPMSRINDAVQRILTVKFTMGLFEHPMGDPSLANQLGSKEHRDLAREAVRKSLVLLKNGKSASQPLLPLDKNAPKILVAGTHPDNLGYQCGGWTIEWQGLSGNITIGTTILSAIQSAVSSSTEVVYQQNPDANYVKEQGFSYAIVVVGEPPYAEMFGDNLNLTIPLGGGDTINNVCGSLKCLVILISGRPLVIEPY
A9NUD1_______________MASRMNSGWYLLLSVVVLCKCAGAIGYAKYKDPSQPIIARVEDLLARMTVEEKIGQMTQIERSDATADVMKKYYIGSVLSGGGSVPAPKASPATWINMVDDLQKGAMSTRLQIPMMYGIDAVHGHNNAYGATMFPHNIGLGATRDPDLARRIGAATALEVRATGIQYTFAPCVAVCRDPRWGRCYESYSEDPKIVKAMTQIIFGLQGQPPANSTKGVPFIAGQSNVAACAKHFVGDGGTTNGIDENNTVIDYKGLVNIHMTPYFDAIAKGVSTIMVSYSSWNGMKMHANRFLVSEVLKKQLGFKGFVISDWQGIDRITSPPGANYSLSVFDGVGAGIDMVMVPENFTNFITELTSQVKGGLISMTRINDAVRRILTVKFTMGLFEYPMADPSLANHFGSKEHRELAREAVRKSLVLLKNGKSAGKPLLPLDKNAPKILVAGTHPNNLGYQCGGWTIEWQGLSGNSTIGTTILQAIKFAVSPSTEVIYQQNPDANYVKGQGFSYAIVVVGEAPYAEMNGDNLNLTIPLGGGDTIKNVCSSLKCLVILISGRPLVIEPY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1350	75			25	0.996473
1496	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain