SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80837

Length: 510 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80837
CGTCGTGACCTTGGCTGTCACTCAATTTGAGGTTGTTTTCTGACGTTGTAGGGGATGCTATTAGGAGCCTGGCTATCCCACAGCAAGAGACGTCTACTTGGCTGTCTCTCGGTTCAACAAGATTGATCAGCTCCCCCACTTTGAAGCCCGGGAACTGGCCGAGAAATTGGGGGTTTCTGATGTGTTTTGGGATTGGGATCTTCCTAGAACCAGAGAAGGGTTTTATAGGTTCCAAGGTTCCACCAAGGCTGCTATTGTCAGGGGTTGGGCTTTTGGACCCCATGCAGACCTAATTTGGATGGAGACATCAAGCCCCGACATGGTAGAATGTAAGGAGTTTGCAGAAGGGGTGAAATCAAAGCATCCAGACCTGATGTTGGCCTACAATCTGTCACCTTCTTTCAATTGGGATGCTTCTCGCATGAGCGATGAACAGATGATGAACTTCATTCCTCAGATAGCACAGTTGGGCTTTTGCTGGCAGTTCATCACTCTGGCTGGATTCCATCG

Ace file of the UniGene sp_v1.1_unigene80837

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	97%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	73%
Blast2go	isocitrate lyase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	89%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg: Separated hits, possible frame ERROR between 110 and 113, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 98 aas, your sequence is shorter than subject: 169 - 573

Fln protein: S*PWLSLNLRLFSDVVGDAIRSLAIPQQETSTWLSxxFNKIDQLPHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAIVRGWAFGPHADLIWMETSSPDMVECKEFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFH

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGAGGTTGTTTTCTGACGTTGTAGGGGATGCTATTAGGAGCCTGGCTATCCCACAGCAAGAGACGTCTACTTGGCTGTCTCTxxxGTTCAACAAGATTGATCAGCTCCCCCACTTTGAAGCCCGGGAACTGGCCGAGAAATTGGGGGTTTCTGATGTGTTTTGGGATTGGGATCTTCCTAGAACCAGAGAAGGGTTTTATAGGTTCCAAGGTTCCACCAAGGCTGCTATTGTCAGGGGTTGGGCTTTTGGACCCCATGCAGACCTAATTTGGATGGAGACATCAAGCCCCGACATGGTAGAATGTAAGGAGTTTGCAGAAGGGGTGAAATCAAAGCATCCAGACCTGATGTTGGCCTACAATCTGTCACCTTCTTTCAATTGGGATGCTTCTCGCATGAGCGATGAACAGATGATGAACTTCATTCCTCAGATAGCACAGTTGGGCTTTTGCTGGCAGTTCATCACTCTGGCTGGATTCCATCG

Fln Alignment:

sp_v1.1_unigene80837___WLSL-NLRLFSDVVGDAIRSLAIPQQETSTWLSLxFNKIDQLPHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAIVRGWAFGPHADLIWMETSSPDMVECKEFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFH
Q41084_______________WMGMANLRLFSDVVGDAIRSLAIPQQEKSNRINLxFNKIDQLSHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAILRGWAFGPHADLIWMETSSPDMVECKRFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain