SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80782

Length: 670 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene80782 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase n=2 Tax=rosids RepID=METK_CARPA	-	-	71%
FL-Next	sp=S-adenosylmethionine synthase 2; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	100%
Blast2go	s-adenosylmethionine synthetase	-	-	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FVG7

Fln msg: Overlapping hits, possible frame ERROR between 288 and 288, Unexpected STOP codon at 3' end. Distance to subject end: 182 aas, your sequence is shorter than subject: 180 - 393

Test code: 1

Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.

Fln protein: METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMxxGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETRADALTHVLATKLGAKLTMVPERVHTVLISTQHDETVTNDQIAAD*

Protein Length: 181

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGTGTAGCTAAGCTCTATTAGCTCAGGCCTCTCTGCTGCTCCTTGGATTGCAATCTCATTCTCTGATTTGCCGTGCTGTTTGCTCTGCTCACTTCAGCCCAGATGGAGACTTTCTTGTTCACATCGGAGTCTGTAAATGAGGGACACCCAGACAAACTCTGTGACCAGATTTCTGATGCAGTGTTGGATGCATGCCTCACCCAGGACCCCGACAGCAAGGTAGCATGCGAGACTTGCACTAAAACGAACATGGTCATGxxxxxxGGTGAAATCACCACTAAGGCCGATGTCGACTACGAGCAGATTGTTCGCAAGACCTGCAGGGAGATTGGTTTCATTTCTGACGATGTGGGTCTTGATGCTGATCACTGCAAAGTGCTGGTTAATATTGAACAGCAGAGCCCTGACATTGCCCAGGGAGTTCATGGACACTTTACCAAGAGGCCTGAGGAGATTGGAGCTGGTGACCAGGGTCACATGTTTGGATATGCAACTGATGAGACCCGAGCTGATGCCCTGACCCATGTGCTGGCTACCAAACTGGGAGCGAAGCTCACCATGGTTCCTGAGCGCGTTCACACTGTTCTCATCTCCACTCAGCACGATGAGACAGTGACCAATGACCAGATTGCTGCAGATTGAAG

Fln Alignment:

sp_v1.1_unigene80782___METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDET-RADALTHVLATKLGAKLT-----------------------------MVPERVHTVLISTQHDETVTNDQIAAD
Q9FVG7_______________METFLFTSESVNEGHPDKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYRNEGGAMVPERVHTVLISTQHDETVTNDQIAAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain