SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80720

Length: 272 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene80720
ATGGGCGATCTTCCCAGGTATTCATCATGCTCTATTAGAGGGTTTTTGTTGCTTTCGTTACTAATTTTCTGGATTTGTTGATATTTAGCGTCCAGGACTTACCTTTCTTTCGTGACAGGTTTGAAGAAAGAGGAGGTAAAGATAGACGTGGAAGACGACCGAGTTTTAAAGATCAGTGGTGAACGCAAGAAAGAAGAGGAGAAAAAGACCGACAAGTGGCACCGGATTGAGCGCTCTCATGGAAAGTTTCTTCGGAGTTTCCGCCTACCGGA

Ace file of the UniGene sp_v1.1_unigene80720

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat shock protein n=1 Tax=Malus x domestica RepID=Q9M6R2_MALDO	-	-	5.0e-12	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	cytosolic class i small heat shock protein type 2	-	-	1.73967e-13	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQJ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 39 aas, your sequence is shorter than subject: 90 - 160

Fln protein: MGDLPRYSSCSIRGFLLLSLLIFWIC*YLASRTYLSFVTGLKKEEVKIDVEDDRVLKISGERKKEEEKKTDKWHRIERSHGKFLRSFRLP

Protein Length: 91

Fln nts: ATGGGCGATCTTCCCAGGTATTCATCATGCTCTATTAGAGGGTTTTTGTTGCTTTCGTTACTAATTTTCTGGATTTGTTGATATTTAGCGTCCAGGACTTACCTTTCTTTCGTGACAGGTTTGAAGAAAGAGGAGGTAAAGATAGACGTGGAAGACGACCGAGTTTTAAAGATCAGTGGTGAACGCAAGAAAGAAGAGGAGAAAAAGACCGACAAGTGGCACCGGATTGAGCGCTCTCATGGAAAGTTTCTTCGGAGTTTCCGCCTACCGGA

Fln Alignment:

sp_v1.1_unigene80720___GLKKEEVKIDVEDDRVLKISGXXXXXXXXXTDKWHRIERSHGKFLRSFRLP
B8LQJ4_______________GLRKEEVKIEVEDDRVLKISGERKKEEEQKNDKWHRIERSHGKFLRRFRLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain