SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80681

Length: 875 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene80681 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PEX22; PEX22 (peroxin 22); protein binding	-	-	3.0e-08	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNC9

Fln msg: Overlapping hits, possible frame ERROR between 217 and 193, and overlapping frame ERROR between 363 and 360, and possible frame ERROR between 502 and 504, query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 178 - 285

Fln protein: MGDSLREALVEIIRRFGTHVSAKMSNIIALLINHKNAGSIGALAGFALAIVxxxxxxxxxxGQQRRLEKRRNSPTANSDDNSQSTGDTVLSSTVFQPSSSLNETAVxxxxFSTMQLSLAQVVKQQLNGGRKSTCNQIGISTLVLR*FLS*LETFxxYSIFRLLGQDTLLLMCWVLIV*

Protein Length: 179

Fln nts: ATGGGGAGATCGAGGGTGGGATCCACCTTTTGGGGTG_-_ATGGGTGATTCCCTGAGGGAGGCTCTCGTCGAGATAATACGCAGATTCGGCACCCATGTGAGTGCCAAGATGTCGAATATCATCGCCCTCTTGATTAATCACAAGAATGCTGGCTCAATTGGAGCCCTTGCAGGATTTGCTCTTGCAATAGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGACAGCAAAGAAGACTAGAAAAACGAAGAAATTCACCAACAGCAAACTCTGATGACAACTCCCAATCAACTGGAGATACAGTCTTGTCTTCTACTGTGTTCCAGCCTAGTTCAAGTTTGAACGAAACAGCAGTTTCxxxxxxxxxATTTAGTACGATGCAGTTAAGTTTGGCACAAGTTGTGAAGCAGCAACTGAATGGTGGTCGAAAGAGCACATGCAACCAGATTGGCATATCGACACTAGTGCTGAGATAATTTCTCAGTTAGCTAGAGACATTCGCxxxATACTCAATATTTCGCCTGTTGGGTCAGGATACATTGCTTCTAATGTGTTGGGTTCTGATAGTTTAG___AGCGCTACTTCGGAGGCATCAGCTGAGGAAGTTTTATGTAAACATATATAATGTAAATTGAAAGTAGTCCATTGAATTATGATGACCAGCTTCATGTTGGTAGCTTGTGCATTAGTGCATTTGTATTCTCTAGTGTTGCTGTTTTGGAAATTAGTCTAAGAATTCATTGTTTTTAACGTCTCGTCTTTGACCTGGGTTAAAGTATCGAGGGATTCTTCTTCTATTAATAATGCATCTTGTAAGCATGTATTTGTGAATGCACTTCTAACTGAATCAACCGTCTTGAATCAAAATCTAAGTGTAAAGAC

Fln Alignment:

sp_v1.1_unigene80681___MGDSLREALVEIIRRFGTHVSAKMSNIIALLINHKNAGSIGALAGFALAIVFTWKxxxxxEISGGQQRRLEKRRNSPTANSDDNSQSTGDTVLSSTVFQPSSSLNETAVSPxEFSTMQLSLAQVVKQQLNGGRKSTCNQIGIxLNISPVGSGYIASNVLGSDSLERYFGGI
A9NNC9_______________MGDSLREALLELIRRFGTHVNAKMSNLIALLINHKNAGSIGALAGFALAIVFTWKxxxxx---GGHHRRLEKRRNSPTANSDDNSQSTGETVLSSNVCQPSSSLNQTAVSPxEFTTMQLSLAQVVRQQLNGGRKITCQLLGVxLHISPVGSGYIASNVFGSDSLERYFGGI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
369			50	50	1.0
370	50		50		1.0
377		50		50	1.0
381		50	50		1.0
384			50	50	1.0
385	50		50		1.0
386	50			50	1.0
387	50	50			1.0
388	50			50	1.0
390			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
369			50	50	1.0
370	50		50		1.0
377		50		50	1.0
381		50	50		1.0
384			50	50	1.0
385	50		50		1.0
386	50			50	1.0
387	50	50			1.0
388	50			50	1.0
390			50	50	1.0

Position	A %	C %	G %	T %	Probability
369			50	50	1.0
370	50		50		1.0
377		50		50	1.0
381		50	50		1.0
384			50	50	1.0
385	50		50		1.0
386	50			50	1.0
387	50	50			1.0
388	50			50	1.0
390			50	50	1.0

Position	A %	C %	G %	T %	Probability
369			50	50	1.0
370	50		50		1.0
377		50		50	1.0
381		50	50		1.0
384			50	50	1.0
385	50		50		1.0
386	50			50	1.0
387	50	50			1.0
388	50			50	1.0
390			50	50	1.0