SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80644

Length: 589 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene80644 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Expansin n=5 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	expansin	-	-	92%

Source	InterPros	Term	Type	Identity
Blast2go	Expansin	IPR002963	-	92%
Blast2go	Expansin/pollen allergen, DPBB domain	IPR007112	-	92%
Blast2go	Pollen allergen/expansin, C-terminal	IPR007117	-	92%
Blast2go	Expansin/Lol pI	IPR007118	-	92%
Blast2go	Barwin-related endoglucanase	IPR009009	-	92%
Blast2go	Barwin-like endoglucanase	IPR014733	-	92%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
219			83	16	0.994512
227	16			83	0.994512
228		16		83	0.994512
229	16			83	0.994512
236			16	83	0.994512
240		16		83	0.994512
242	16			83	0.994512
244		83	16		0.994512
291	14	85			0.993533
312	14		85		0.993533
320	14	85			0.993533
357	71		28		1.0
360	28		71		1.0
362	14	85			0.993533
364			16	66	0.988813
365		16		83	0.994512
366		16	66	16	0.988813
368	16			83	0.994512
369			16	83	0.994512
372	83	16			0.994512
374	83	16			0.994512
375		83	16		0.994512
376	16	16		66	0.988813
377		16	83		0.994512
390		33		66	0.997471
421			33	66	0.997452
431		66		33	0.997452
432		66		33	0.997452
449	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain