SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80504

Length: 1310 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene80504

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydroflavonol 4-reductase n=4 Tax=Lotus RepID=Q403G8_LOTJA	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	dihydroflavonol 4-reductase	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	64%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA9

Fln msg: your sequence is shorter than subject: 326 - 351

Fln protein: MASCGSEKVRGLKGDEACEENKRVVCVTGANGYIGSWLVMRLLEHGYYVHGTVRDPEDPGKVGHLLGLPGASEKLKLFKADLNNEMAFDDAVSGCQGVFHVAKPVNLDSNALQGEVVGPAVRGTVNLLRACERSGTVKRVIHTSSVHWTSVEYCRKTKMVGWMYYIANTYAEEGAHKFGSENKMDVISILPAITVGDFLTLQIPGSVATLMALPKGDADFYSYTPRVPYVHIEDIVRAFIFLYEHPDSKGRYICSLQDVALEELAQVFQNRHQLNVPAKFDNLRSDYIYPCVDSGKLKKLGFEYKYSLEDIVDDAVKSYKRRGLF*

Protein Length: 327

Fln nts: ATGGGGATATACAAGAACCATGCATCAATTTTTGCATATTATTAAAAAGTAAGTGTATTCGTTCTCTATATTGATCAGTCACAGAGTC_-_ATGGCCAGTTGTGGTTCCGAGAAAGTAAGAGGGTTGAAAGGAGATGAAGCATGCGAAGAGAACAAGCGAGTGGTTTGTGTAACAGGGGCAAATGGGTACATCGGCTCTTGGCTGGTCATGAGATTACTGGAACATGGCTATTATGTTCATGGAACTGTCAGGGACCCAGAAGACCCAGGGAAGGTTGGGCATTTGCTGGGGCTTCCAGGGGCAAGTGAGAAGCTAAAGCTGTTCAAGGCAGATCTCAACAACGAAATGGCCTTTGATGATGCTGTGAGCGGTTGTCAAGGAGTTTTCCATGTTGCCAAGCCTGTTAATCTGGACTCAAACGCTCTTCAGGGGGAGGTTGTTGGTCCTGCGGTGAGGGGAACAGTAAATCTGCTTCGGGCCTGCGAGCGATCGGGCACTGTGAAACGAGTGATACATACCTCGTCCGTTCATTGGACATCGGTCGAGTATTGCAGAAAGACAAAGATGGTCGGATGGATGTACTACATCGCCAACACTTATGCAGAAGAGGGAGCCCATAAGTTCGGATCAGAGAACAAAATGGACGTTATCAGCATCCTACCAGCAATCACTGTGGGGGATTTTCTCACTCTTCAGATCCCAGGCAGCGTGGCTACTCTCATGGCGTTGCCCAAAGGAGATGCAGACTTTTATTCTTACACCCCACGTGTCCCTTACGTACACATAGAGGACATTGTGAGGGCTTTCATCTTCTTGTATGAACATCCAGACTCCAAAGGGAGGTACATCTGCTCTCTCCAGGACGTAGCCTTGGAAGAACTTGCTCAAGTCTTTCAGAACCGACATCAACTTAATGTACCTGCAAAGTTTGATAATCTTCGTAGTGATTACATATATCCTTGTGTGGACTCTGGAAAGCTGAAAAAGCTTGGATTTGAGTACAAATATTCTTTAGAGGATATCGTTGATGATGCAGTCAAATCTTATAAACGGAGAGGACTCTTTTAA___ATGGCACATACGCCTGGCATGATCATAATGTTATTTGCTTGGTAGTGTGACAGTATGCTTCAATAGTTTCACTGTTACTCGTAAAGTTTCATTTATATTTTCAGAAAATAAATCTCATTTTACGTTTTGGCATCTGCTGATCAATCTGTGAATGCCAACGGTGCTTCTTCGGTTGAAGTTGCCTTAAAGCTTAGGGTGGCGGTTTTTATGTTTCCTCCGATATAATATGAACGGGCCATATTTG

Fln Alignment:

sp_v1.1_unigene80504___NKRVVCVTGANGYIGSWLVMRLLEHGYYVHGTVRDPEDPGKVGHLLGLPGASEKLKLFKADLNNEMAFDDAVSGCQGVFHVAKPVNLDSNALQGEVVGPAVRGTVNLLRACERSGTVKRVIHTSSVH-------------------WTSVEYCRKTKMVGWMYYIANTYAEEGAHKFGSENKMDVISILPAITVGDFLTLQIPGSVATLMALPKGDADFYSYTPRVPYVHIEDIVRAFIFLYEHPDSKGRYICSLQDVALEELAQVFQNRH-QLNVPAKFDNLRSDYIYPCV--DSGKLKKLGFEYKYSLEDIVDDAVKSYKRRGL
A9NNA9_______________HRGTVCVTGAAGFIGSWLIMRLLERGYTVRATVRDTGKPLKTKHLLDLPGANERLTLWKADLDDERSFDAAVDGCEGVFHVATPMDFESEDPENDIIKPTVNGVLNVMKSCAKAKSVKRVVFTSSAGTVNFTDDFQTPGKVFDESCWTNVDLCRKVKMTGWMYFVSKTLAEKAAWDFAEENKIDLLTVIPTLVVGPFIMQTMPPSMITALALLTRNEPHYMILRQVQLVHLDDLCMSHIFVYEHPEAKGRYISSTCDATIVQVAKMLAQKYPEYNVPTKFKD--ADESLPAVPFSSKKLLDLGFKFNYTMEEMFDGAIQCCREKGL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
16	66		33		0.997454
17		66	33		0.997454
209		25		75	0.996473
349	75		25		0.996474
454			66	33	0.997455
698		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain