SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80461

Length: 435 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene80461
ATGGGGGGTGCTGCTGCTCCACCAGTTCGTGCCCCTGCCCTGGGAACGGGCGCTCCAGCTCCACCAATAAGTGCGCTCTGGTTCCTTTCAGAGTTTCTGGCGTTTGGCCATTTCAATTAAGCTTTGTATAGCTGGGCTTTCCTGGGTTTACTAATTTGTTGCAATTTGCATTGTACTACAGACTGCAAACAGGATGTGGAGAAAGATGCAAGCTGCACAGCCGACCTAATCTGTGTATGAGAGCTTGTGGGACGTGCTGTGCACGATGCAAGTGTGTTCCACCTGGTCAAAGTGGAAACAGAGAGGTCTGTGGCTCCTGCTACACTGACTGGAAACCCACAACAACCAGACCAAGTGCCCTTAGATTTCCTTCTCTTTTGTGGCAAATGAGATCACTTGAACTTTATCAGCTTCTTACATGTTGTATATTGTATC

Ace file of the UniGene sp_v1.1_unigene80461

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin-regulated protein 3 precursor, putative	-	-	3.0e-18	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	gibberellin-regulated protein 3	-	-	3.71011e-25	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Gibberellin regulated protein	IPR003854	-	3.71011e-25	81%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQS3

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 24 aas, your sequence is shorter than subject: 144 - 175

Fln protein: GGCCCSTSSCPCPGNGRSSSTNKCALVPFRVSGVWPFQLSFV*LGFPGFTNLLQFALYYRLQTGCGERCKLHSRPNLCMRACGTCCARCKCVPPGQSGNREVCGSCYTDWKPTTTRPSALRFPSLLWQMRSLELYQLLTCCILY

Protein Length: 145

Fln nts: ATGGGGGGTGCTGCTGCTCCACCAGTTCGTGCCCCTGCCCTGGGAACGGGCGCTCCAGCTCCACCAATAAGTGCGCTCTGGTTCCTTTCAGAGTTTCTGGCGTTTGGCCATTTCAATTAAGCTTTGTATAGCTGGGCTTTCCTGGGTTTACTAATTTGTTGCAATTTGCATTGTACTACAGACTGCAAACAGGATGTGGAGAAAGATGCAAGCTGCACAGCCGACCTAATCTGTGTATGAGAGCTTGTGGGACGTGCTGTGCACGATGCAAGTGTGTTCCACCTGGTCAAAGTGGAAACAGAGAGGTCTGTGGCTCCTGCTACACTGACTGGAAACCCACAACAACCAGACCAAGTGCCCTTAGATTTCCTTCTCTTTTGTGGCAAATGAGATCACTTGAACTTTATCAGCTTCTTACATGTTGTATATTGTATC

Fln Alignment:

sp_v1.1_unigene80461___QTGCGERCKLHSRPNLCMRACGTCCARCKCVPPGQSGNREVCGSCYTDWK
A9NQS3_______________KAGCGERCKLHGRPNVCLRACGTCCAKCKCVPPGHSGNREVCGSCYTDWK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain