SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80451

Length: 387 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene80451
CACCTGTCCTCCGCCTTANAGGTGGGATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACTATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACCAGCAGAGGCTGATCTTTGCTGGAAAGCAACTTGAGGACGGACGCAAATCTTTGTGAAAACCCTGACCGGCAAGACCATCACGCTAGAAGTTGAGAGCTCCGACACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCAGCAGAGATTGATCTTTGCGGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTATAACATTCAAAAGGACAAGATGCAGGG

Ace file of the UniGene sp_v1.1_unigene80451 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	93%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	96%
Blast2go	polyubiquitin	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	96%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	96%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%
Blast2go	vacuole	GO:0005773	Cellular Component	96%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 19 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 120 - 761

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLxxxxxIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKDKMQ

Protein Length: 121

Fln nts: CACCTGTCCTCCGCCTTAtAGGTGGG_-_ATGCAGATCTTTGTCAAGACCCTGACCGGCAAGACAATTACCCTGGAAGTTGAGAGTTCTGACACTATTGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACCAGCAGAGGCTGATCTTTGCTGGAAAGCAACTTxxxxxxxxxxxxxxxATCTTTGTGAAAACCCTGACCGGCAAGACCATCACGCTAGAAGTTGAGAGCTCCGACACTATTGATAATGTGAAGTCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCAGCAGAGATTGATCTTTGCGGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTATAACATTCAAAAGGACAAGATGCAGGG

Fln Alignment:

sp_v1.1_unigene80451___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q41067_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain