SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80443

Length: 257 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80443
CGTCGTGACCTTGGCTGTCACTCAATTCACTTATTTGAGAATGAACCAGCATTTGTTCGTGCCTGGCTGTTGGTGATTGTTTGTCTCATTTGTAAGAAAATGGCACAAGGAGGGGTCTCACATTCATGGGAGCAAGAACACGGAGATACAGACTCATTTGTCTATGCCACGGTCCCATTGGTCCAAGAGGCTGCTGCACTCTTGCATAATTAAGCAAGCCTAAAGCTTAACTTTTTGAAGCAGGCAAAATCTGAATG

Ace file of the UniGene sp_v1.1_unigene80443

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-amylase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HSW9_POPTR	-	-	7.0e-06	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD77

Fln msg: your sequence is shorter than subject: 71 - 210

Fln protein: RRDLGCHSIHLFENEPAFVRAWLLVIVCLICKKMAQGGVSHSWEQEHGDTDSFVYATVPLVQEAAALLHN*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCACTTATTTGAGAATGAACCAGCATTTGTTCGTGCCTGGCTGTTGGTGATTGTTTGTCTCATTTGTAAGAAAATGGCACAAGGAGGGGTCTCACATTCATGGGAGCAAGAACACGGAGATACAGACTCATTTGTCTATGCCACGGTCCCATTGGTCCAAGAGGCTGCTGCACTCTTGCATAATTAA___GCAAGCCTAAAGCTTAACTTTTTGAAGCAGGCAAAATCTGAATG

Fln Alignment:

sp_v1.1_unigene80443___SIHLFENEPAFVRAWLLVIVCLICKKMAQG-GVSHSWEQEHGDTDSFVYATVPLVQEAAALLH
D5AD77_______________SQHLFHPEN-----WRLFVSFV--RKLAQGQATSNSWEQEHRDTDKFVHAGGPMVQEAAALLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain