SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80439

Length: 353 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80439
CGTCGTGACCTTGGCTGTCACTCAGTCGACTTGGGCACTTCCATATAGTAAACAATGACTACACTCATTGGCACATGTATGCCATTGGTGGAAGTGGTAATCCCACCATACTGAGTCAAGGCAACCGGTTCTTGGCACCTGAAGATCCTAGAGCTAACGTGGTACCTTGGCTGTTACTCGAGTAATGACGGGATGCTATGGAATTGGATATCAAGAGATGATCTGCTACTCAATGGCGCATTTTTTCAACAATCTGGAGCAGTTTCTCAAACCTTGAGTACATATAGCGTAAATCCTATGCCTGGTAATCTTGTTGGAGCGATCACTCAGAACGCAGGTGTACTCACATGCAC

Ace file of the UniGene sp_v1.1_unigene80439

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable pectate lyase P18 n=1 Tax=Solanum lycopersicum RepID=PLY18_SOLLC	-	-	2.0e-23	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	pectate lyase	-	-	1.9225e-23	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pectin lyase fold	IPR012334	-	1.9225e-23	85%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ36

Fln msg: Separated hits, possible frame ERROR between 164 and 199, Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 117 - 426

Fln protein: S*PWLSLSRLGHFHIVNNDYTHWHMYAIGGSGNPTILSQGNRFLAPEDPRANVxxxxxxxxxxxxxWNWISRDDLLLNGAFFQQSGAVSQTLSTYSVNPMPGNLVGAITQNAGVLTC

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGACTTGGGCACTTCCATATAGTAAACAATGACTACACTCATTGGCACATGTATGCCATTGGTGGAAGTGGTAATCCCACCATACTGAGTCAAGGCAACCGGTTCTTGGCACCTGAAGATCCTAGAGCTAACGTGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGGAATTGGATATCAAGAGATGATCTGCTACTCAATGGCGCATTTTTTCAACAATCTGGAGCAGTTTCTCAAACCTTGAGTACATATAGCGTAAATCCTATGCCTGGTAATCTTGTTGGAGCGATCACTCAGAACGCAGGTGTACTCACATGCAC

Fln Alignment:

sp_v1.1_unigene80439___RLGHFHIVNNDYTHWHMYAIGGSGNPTILSQGNRFLAPEDPRANVVxxxxxxxxxxxxWNWISRDDLLLNGAFFQQSGA--VSQTLSTYSVNPMPGNLVGAITQNAGVLTC
B8LQ36_______________RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPLAKEVxxxxxxxxxxxxWNWRSNGDMMLNGAYFTPSGAGESSAYIRASSLPARPSSLVGPLTQNAGVLFC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain