SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80388

Length: 419 nt

UniGene Fasta

>sp_v1.1_unigene80388
GAAGTAAAATCCGTTGCATCTCTGTGTTATTTAATCGTCTTGACTTTGGGTGTACTATATCTTCTGTAGAGTTTTGAAATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAGTGGAGATCATCGCCAATGACCAAGGGAACAGGACCACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTTGA

Ace file of the UniGene sp_v1.1_unigene80388

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heat shock protein, putative (EC:1.3.1.74); K03283 heat shock 70kDa protein 1/8	-	-	1.0e-37	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	heat shock protein 70	-	-	3.42295e-41	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein refolding	GO:0042026	Biological Process	3.42295e-41	95%
Blast2go	negative regulation of inclusion body assembly	GO:0090084	Biological Process	3.42295e-41	95%
Blast2go	negative regulation of cell growth	GO:0030308	Biological Process	3.42295e-41	95%
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	3.42295e-41	95%
Blast2go	mRNA catabolic process	GO:0006402	Biological Process	3.42295e-41	95%
Blast2go	response to unfolded protein	GO:0006986	Biological Process	3.42295e-41	95%
Blast2go	protein N-terminus binding	GO:0047485	Molecular Function	3.42295e-41	95%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	3.42295e-41	95%
Blast2go	protein binding involved in protein folding	GO:0044183	Molecular Function	3.42295e-41	95%
Blast2go	nuclear speck	GO:0016607	Cellular Component	3.42295e-41	95%
Blast2go	inclusion body	GO:0016234	Cellular Component	3.42295e-41	95%
Blast2go	perinuclear region of cytoplasm	GO:0048471	Cellular Component	3.42295e-41	95%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	3.42295e-41	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutamate dehydrogenase, NAD-specific	IPR019651	-	3.42295e-41	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: Distance to subject end: 448 aas, your sequence is shorter than subject: 113 - 652

Fln protein: MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIF

Protein Length: 114

Fln nts: GAAGTAAAATCCGTTGCATCTCTGTGTTATTTAATCGTCTTGACTTTGGGTGTACTATATCTTCTGTAGAGTTTTGAA_-_ATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAGTGGAGATCATCGCCAATGACCAAGGGAACAGGACCACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTTGA

Fln Alignment:

sp_v1.1_unigene80388___KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIAGLNVMRIINEPT
B8LRY5_______________KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIG-----RRFSDPT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
235	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain