SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80352

Length: 426 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene80352
ATTGTCATTTGGGTGTAAGGATATAACATTCAGCTGCAGCAAACGTGAAAGTGGACTGAACTCCAAGGACAGGAGCAGAGTAAGGTTGCGAAGCATCAGAAAATGGATTACAAAAGTCTGTTGCAGAGCGATGCCCTTTATGAGTATATATTGGAAACCAGCGTGTACCCTCGTGAGCCAGAGCCCTTGAAGGAGCTCCGGGAATTGACTATCAAACATCCCTGGCACGAGATGGCTATTCCTCCAGATGAAGGTCAATTTCTGAGCCTCCTGTTGAAGCTGATGAACGCCAAGAACACCATCGAGATTGGGGTGTACACTGGTTACTCACTTCTCAGCACAGCCCTTGCCTTACCCTGTGATGGAAAGATAATAGCGATGGACATTAACAGGGCGAATTATGATATGGGGCGACCTATCATTGAG

Ace file of the UniGene sp_v1.1_unigene80352 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caffeoyl-CoA-O-methyltransferase (Fragment) n=8 Tax=Pinus RepID=A4FT66_PINPS	-	-	5.0e-39	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	caffeoyl o-methyltransferase	-	-	8.3256e-40	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-methyltransferase, family 3	IPR002935	-	8.3256e-40	88%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD15

Fln msg: Distance to subject end: 122 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 126 - 251

Fln protein: KWTELQGQEQSKVAKHQKMDYKSLLQSDALYEYILETSVYPREPEPLKELRELTIKHPWHEMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPCDGKIIAMDINRANYDMGRPIIE

Protein Length: 127

Fln nts: ATTGTCATTTGGGTGTAAGGATATAACATTCAGCTGCAGCAAACGTGAAAGTGGACTGAACTCCAAGGACAGGAGCAGAGTAAGGTTGCGAAGCATCAGAAAATGGATTACAAAAGTCTGTTGCAGAGCGATGCCCTTTATGAGTATATATTGGAAACCAGCGTGTACCCTCGTGAGCCAGAGCCCTTGAAGGAGCTCCGGGAATTGACTATCAAACATCCCTGGCACGAGATGGCTATTCCTCCAGATGAAGGTCAATTTCTGAGCCTCCTGTTGAAGCTGATGAACGCCAAGAACACCATCGAGATTGGGGTGTACACTGGTTACTCACTTCTCAGCACAGCCCTTGCCTTACCCTGTGATGGAAAGATAATAGCGATGGACATTAACAGGGCGAATTATGATATGGGGCGACCTATCATTGAG

Fln Alignment:

sp_v1.1_unigene80352___QGQEQSKVAKHQKMDYKSLLQSDALYEYILETSVYXXXXXXXXXXXXLTIKHPWHEMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPCDGKIIAMDINRANYDMGRPIIE
D5AD15_______________QLQEKSKVALDHQMDNKSLLQSDALYQYILETNVYPREPEPLKELRQVTAKVPWNFMAIPPDEGQFLSLLLKLMNAKNTIEIGVYTGYSLLSTALALPEDGKIIAMDTDRRTYEIGRPIIE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
295		75		25	0.996473
296	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain