SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80350

Length: 316 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80350
CGTCGTGACCTTGGCTGTCACTCAGGTTTTAGCCGCTGGAATTGTGTCGAAGAATATAGATACAGTCAATAGGCTTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTCAACTGCTACTATGCATTTTATTCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGGATTGGTAGAGAGCAGGGTCTTGATGTTCTTAAGAATTATTTGGCAGTCAAGTGTGTTATAACTCTTCTCCATGAGTCACCCTGGTTGTAGAAATATGGTTAACCTCTATGTTTTTCAAATGCTTTCTAGCTTTATATATTTACGTTGAAC

Ace file of the UniGene sp_v1.1_unigene80350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RKT3_RICCO	-	-	3.0e-22	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	cytosolic aldehyde dehydrogenase	-	-	3.55497e-22	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aldehyde dehydrogenase domain	IPR015590	-	3.55497e-22	78%
Blast2go	Aldehyde/histidinol dehydrogenase	IPR016161	-	3.55497e-22	78%
Blast2go	Aldehyde dehydrogenase, C-terminal	IPR016163	-	3.55497e-22	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV57

Fln msg: your sequence is shorter than subject: 85 - 248

Fln protein: VVTLAVTQVLAAGIVSKNIDTVNRLSRSIRAGVIWVNCYYAFYSDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITLLHESPWL*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTTAGCCGCTGGAATTGTGTCGAAGAATATAGATACAGTCAATAGGCTTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTCAACTGCTACTATGCATTTTATTCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGGATTGGTAGAGAGCAGGGTCTTGATGTTCTTAAGAATTATTTGGCAGTCAAGTGTGTTATAACTCTTCTCCATGAGTCACCCTGGTTGTAG___AAATATGGTTAACCTCTATGTTTTTCAAATGCTTTCTAGCTTTATATATTTACGTTGAAC

Fln Alignment:

sp_v1.1_unigene80350___GIVSKNIDTVNRLSRSIRAGVIWVNCYYAFYSDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITLLHESPWL
A9NV57_______________GIVTKDIDIANRFARSLRAGVVWINCFLVLGADVPMGGYKMSGIGREYGSKGLENYLQVKCVISPLQHSPWL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain