SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80330

Length: 1093 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene80330

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	78%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	ubiquitin isoform cra_a	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	77%
Blast2go	induction of apoptosis by extracellular signals	GO:0008624	Biological Process	77%
Blast2go	anti-apoptosis	GO:0006916	Biological Process	77%
Blast2go	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051437	Biological Process	77%
Blast2go	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145	Biological Process	77%
Blast2go	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	GO:0051436	Biological Process	77%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%
Blast2go	endosome membrane	GO:0010008	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	77%
Blast2go	Ubiquitin conserved site	IPR019954	-	77%
Blast2go	Ubiquitin supergroup	IPR019955	-	77%
Blast2go	Ubiquitin subgroup	IPR019956	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg: your sequence is shorter than subject: 258 - 305

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGACRFSQNPDR*AITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLPRLQY*EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 259

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTCTGGCTTTTGCGAATTCTGATAAGTTCAGCTATTTTTTCTGAAACAGGTCTTCAGTAGTGTTGTTACGCTTTCAAG_-_ATGCAGATCTTTGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAACAGCGTTTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTACAATATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGCATGCAGATTTTCGCAAAACCCTGACCGGTAAGCGATAACGTTGGAAGTTGAGAGCTCGGATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAGCGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACACTGcCAAGACTcCAgtAttaagAAGGAATTCCGCCAGACCAGCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGTAGGACCTTGGCTGACTACAACATTCAAAAGGAGTCAACCCTGCATCTGGTGCTTCGTCTAAGAGGAGGGATGCAGATCTTTGTAAAAACCCTTACAGGTAAAACAATTACTCTGGAAGTGGAAAGCTCGGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGTTAGAAGATGGTCGCACTCTGGCCGATTATAATATTCAGAAGGAGTCGACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCTTTTAG___GTGGATGGGCTCTTATGTGTCAATGATGGTCTGGTGATGTTCAGTTGTCGTCCTGCTTGTCGTGGACAAGTACTGTTTATGTTTCTATGTCTTATGTACTGTTTATGTTTCTATGTCTATGTGCTGTTATTATTTCCACTTTGTTTGTTGGTCAGTCGAAGCACTACCTGGTCGGTAGTGCTATGCTATTTCCTTTAATATAAGGACTATGTT

Fln Alignment:

sp_v1.1_unigene80330___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGACR-FSQNPDR*AITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLP-----------------------------------------------RLQY*EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Q3E7T8_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

SNPs (tot: 3)

Position	C %	G %	T %	Probability
255	87	12		0.992554
256		12	87	0.992554
892		81	18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain