SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80310

Length: 1270 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene80310

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin n=49 Tax=Eukaryota RepID=UBQ10_ARATH	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	polyubiquitin	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	94%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	94%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	94%
Blast2go	aging	GO:0007568	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	vacuole	GO:0005773	Cellular Component	94%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	94%
Blast2go	Ubiquitin conserved site	IPR019954	-	94%
Blast2go	Ubiquitin supergroup	IPR019955	-	94%
Blast2go	Ubiquitin subgroup	IPR019956	-	94%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure STOP codon was not found. Distance to subject end: 4 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 424 - 458

Fln protein: WYQRRVSSGIKRRVSSGINAEYMGELQ*RTN*RKGLLPPPPSYNCAG*VCFVPFVATMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMQIFVKTLTGKTITLEVDSSDTIDNVKAKIHDKEGIPPDQQRLIFAGKQLEDGRTLRQELTN

Protein Length: 425

Fln nts: AGTGGTATCAACGCAGAGTAAGCAGTGGTATCAAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGGAGTTACAGTAAAGAACGAACTAAAGAAAGGGTCTGCTGCCTCCACCTCCGTCATATAATTGTGCAGGTTAGGTTTGTTTTGTACCATTTGTTGCCACT_-_ATGCAGATATTTGTGAAGACATTGACTGGAAAGACTATAACTCTGGAGGTAGAGAGCTCTGACACGATTGATAATGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGCAGATTTTTGTTAAGACACTGACTGGCAAGACAATCACTCTTGAAGTTGACAGTTCTGACACAATTGACAATGTCAAAGCCAAGATTCATGATAAAGAGGGAATTCCTCCAGATCAGCAGAGGTTGATATTTGCCGGGAAGCAACTTGAAGATGGAAGGACACTTAGACAAGAATTAACAAAT

Fln Alignment:

sp_v1.1_unigene80310___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
C0PSZ6_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
879	83		16		0.994512
940		83		16	0.994513
966	16		83		0.994523
971	83		16		0.994512
981	83		16		0.994523
1032			80	20	0.999996
1055			11	88	0.923564
1057	11			88	0.923564
1060			88	11	0.923564
1063		11		88	0.923564
1066		88		11	0.923564
1070		85		14	0.993533
1072	85			14	0.993533
1073	85		14		0.993533
1074		85		14	0.993533
1075	85			14	0.993533
1078	85			14	0.993533
1082		83		16	0.994512
1104	20			80	0.995493
1108		20		80	0.995493
1110	80		20		0.995493
1121			80	20	0.995493
1128		80		20	0.995493
1129	80			20	0.995493
1148		80	20		0.995493
1175	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain