SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80307

Length: 1200 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene80307

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial dicarboxylate carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SXH6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSC7

Fln msg: Overlapping hits, possible frame ERROR between 852 and 834,

Fln protein: MGVKGFLEGGIASVVAGCSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVTELAHQNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVQKITAGLIAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVGDAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLATYDPIKETIISRDIMKDGLGTHVxxxxxxxxVASVASNPVDVIKTRIMNMDHKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPIKAEGPMALYKGFIPTVTRQGPFTVVLYVTLEQVRKIFKDLNF*

Protein Length: 332

Fln nts: TCAGAGAGTGTCTTAGTAGATTCCTCCATTATTTGCATATCTCTGAGAGGGACCACGATCCGCGACCTTGCTCAAGCGCTTCCGGCTGATCCCGCTGAGCGAGAGAGGAGGGAGTATTATTTTCTTGGGTGCTGAAGTGGTTCTTGTTCCAGAAAA_-_ATGGGCGTAAAGGGGTTTCTGGAAGGAGGGATTGCCTCGGTTGTCGCAGGCTGTAGCACGCACCCTCTGGATCTGATAAAGGTGCGCATGCAGCTACAAGGCGAACAAACTGTTCGCCCCGCATTCGCCTTTGCTAATGTGGGCGCCGGTTACCCGGTGACGGAATTAGCCCACCAGAATAGGGTGGGACCAATCTCTGTGGGAATCCGCGTGGTTCAGACGGAGGGAGTGTCTGCGCTCTTTTCCGGTGTGTCTGCAACCATGCTCCGGCAGGTACTGTACTCGACCACTCGCATGGGTTTATACGAGATTCTGAAGGAGAAATGGCGAGAGCCGGGTTCGAAACCGGGAAACCTACCACTTGTCCAGAAGATCACCGCCGGTTTGATCGCTGGAGGCATCGGCGCCGCTGTGGGCAACCCTGCTGATGTGGCGATGGTGAGAATGCAAGCCGATGGGCGCCTCCCGGTTGCCCAGAGGCGCAACTACACGAGCGTTGGCGATGCCATTGGTCGCATGGTTCGACAAGAGGGCGTGACTTCACTGTGGACAGGGTCATCGTTGACCGTCCAGAGGGCCATGATCGTGACGGCCTCGCAGCTGGCTACCTACGATCCGATCAAGGAGACTATCATCTCCCGCGACATTATGAAAGACGGCCTGGGCACACATGTCxxxxxxxxxxxxxxxxxxxxxxxxGTGGCTTCCGTGGCTTCGAATCCCGTGGACGTCATCAAGACCCGGATCATGAATATGGACCATAAACCAGGACAGCCCGCACCTTATTCTGGAGCCCTTGACTGTGCTATGAAGACCATCAAGGCGGAAGGTCCTATGGCTCTTTACAAGGGGTTTATCCCTATCAAGGCGGAAGGTCCTATGGCTCTTTACAAGGGGTTTATCCCTACTGTGACCAGACAAGGTCCCTTTACTGTCGTTCTTTACGTTACTCTGGAGCAAGTTAGGAAAATTTTCAAGGACCTTAATTTTTAA___ATCTTATTCTCAACAATTTTATAATTCTATGCCTCCATTGTGGCCATTTATT

Fln Alignment:

sp_v1.1_unigene80307___MGVKGFLEGGIASVVAGCSTHPLDLIKVRMQLQGEQTVRPAFAFANVGAGYPVTELAHQNRVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVQKXXXXXXXXXXXXXXXXXXDVAMVRMQADGRLPVAQRRNYTSVGDAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLATYDPIKETIISRDIMKDGLGTHVTxxxxxxFVASVASNPVDVIKTRIMNMDHKPGQPAPYSGALDCAMKTIKAEGPMALYKGFIPIKAEGPMALYKGFIPTVTRQGPFTVVLYVTLEQVRKIFKDLNF
C0PSC7_______________MGVKGFVEGGIASVVAGCSTHPLDLIKVRMQLQGEQNVRPAFAFANVGAGCPAAELAHQ-KVGPISVGIRVVQTEGVSALFSGVSATMLRQVLYSTTRMGLYEILKEKWREPGSKPGNLPLVKKIAAGLTAGGIGAAVGNPADVAMVRMQADGRLPVAQRRNYTSVADAIGRMVRQEGVTSLWTGSSLTVQRAMIVTASQLASYDQIKETIISRDIMKDGLGTHVTxxxxxxFVAAVASNPVDVIKTRIMNMNPKPGQPAPYSGALDCAMKTIKAEGPMALY---------------KGFIPTVTRQGPFTVVLFVTLEQVRKIFKDLNF

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
447		83		16	0.994512
468			85	14	0.993533
469	85		14		0.993533
470			14	85	0.993533
471			14	85	0.993533
609	66		33		0.997452
659			75	25	0.996473
923	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain