SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80268

Length: 397 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80268
CGTCGTGACCTTGGCTGTCACTCAATCATAGGGCAGCCTTTCATAAGAATTTCTACTGGTAGCAGAATCCTCAAGAACGGTGATCGATCTGAGTCCGCGTTAAAGTAAACAAACAAAGTCCTTTCGCTTTCGCCCGCCTTAGGTCTGATTGCAGAATGGGATCATCGGTTAGACGGGTTTTGATCCATGCGATTGCTATCGCATGGCTGTGGTTAAGCATTTCTGCTGTTACGCGGGCTTCCCATGTGATGCATGCTGTTAACACAGCGAGCACAAGAGTTGAACAGCGATATCGCACAGCCTATCATTTTCAGCCTAAGAAAAACTGGATGAACGACCCTAATGCGCCAATGTTCTACAAGGGATTCTACCATCTCTTCTACCAGTATAATCCTTA

Ace file of the UniGene sp_v1.1_unigene80268

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell wall invertase BObetaFRUCT1 n=1 Tax=Bambusa oldhamii RepID=Q2XQ21_BAMOL	-	-	7.0e-16	54%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme 2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	50%
Blast2go	gif1	-	-	1.44315e-15	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	1.44315e-15	64%
Blast2go	Glycoside hydrolase, family 32, active site	IPR018053	-	1.44315e-15	64%
Blast2go	Glycosyl hydrolase family 43, five-bladed beta-propellor domain	IPR023296	-	1.44315e-15	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q0JDC5

Fln msg: Distance to subject end: 509 aas, your sequence is shorter than subject: 80 - 598

Fln protein: MGSSVRRVLIHAIAIAWLWLSISAVTRASHVMHAVNTASTRVEQRYRTAYHFQPKKNWMNDPNAPMFYKGFYHLFYQYNP

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATAGGGCAGCCTTTCATAAGAATTTCTACTGGTAGCAGAATCCTCAAGAACGGTGATCGATCTGAGTCCGCGTTAAAGTAAACAAACAAAGTCCTTTCGCTTTCGCCCGCCTTAGGTCTGATTGCAGA_-_ATGGGATCATCGGTTAGACGGGTTTTGATCCATGCGATTGCTATCGCATGGCTGTGGTTAAGCATTTCTGCTGTTACGCGGGCTTCCCATGTGATGCATGCTGTTAACACAGCGAGCACAAGAGTTGAACAGCGATATCGCACAGCCTATCATTTTCAGCCTAAGAAAAACTGGATGAACGACCCTAATGCGCCAATGTTCTACAAGGGATTCTACCATCTCTTCTACCAGTATAATCCTTA

Fln Alignment:

sp_v1.1_unigene80268___IAWLWLS----ISAVTRASHVMH-------AVNTAS----TRVEQRYRTAYHFQPKKNWMNDPNAPMFYKGFYHLFYQYNP
Q0JDC5_______________VAWAWLVQLLLLQQLAGASHVVYDDLELQAAATTADGVPPSIVDSELRTGYHFQPPKNWINDPNAPMYYKGWYHLFYQYNP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
150			33	66	0.997476
152	33		66		0.997476
291	66		33		0.997471
306		33		66	0.997461

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain