SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80219

Length: 414 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene80219
CGTCGTGACCTTGGCTGTTACTATTTGAGAGTTGCGGGTTAGTTGGAGCTTGAAGAGAACCTGTGGCAAGGAGCTTCCATGGCGACGGCTTGTACTGTCAAAGATGTTTCACCTCACGAATTCGTCAGGGCTTACGCTGCCCATCTCAAGCGTTCGGGAAAGATTGAGCTTCCCCATTGGACCGATCTTGTGAAGACCGCCACATTCAAGGAACTTGCTCCATATGATCCTGATTGGTATTATGTCAGAGCAGCTTCTATGGCACGCAAGATCTATGGTGGAGTCAGAGAAATGGGTCTCGCCCACCACATTTCTGTAAGAGCAGTGGTTCTATAGCACGCCATATACTGCAGCAACTGGAGAAAATGAACATTATTGAGATGGATCCCAATGGTGGAAGACGTATTACATCCA

Ace file of the UniGene sp_v1.1_unigene80219

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S19, putative; K02966 small subunit ribosomal protein S19e	-	-	8.40779e-45	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	40s ribosomal protein s19	-	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	93%
Blast2go	vacuole	GO:0005773	Cellular Component	93%
Blast2go	cell wall	GO:0005618	Cellular Component	93%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKW9

Fln msg: Separated hits, possible frame ERROR between 276 and 285, Distance to subject end: 18 aas, your sequence is shorter than subject: 112 - 144

Fln protein: MATACTVKDVSPHEFVRAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMARKIxxxxQRNGSRPPHFCKSSGSIARHILQQLEKMNIIEMDPNGGRRITS

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTTACTATTTGAGAGTTGCGGGTTAGTTGGAGCTTGAAGAGAACCTGTGGCAAGGAGCTTCC_-_ATGGCGACGGCTTGTACTGTCAAAGATGTTTCACCTCACGAATTCGTCAGGGCTTACGCTGCCCATCTCAAGCGTTCGGGAAAGATTGAGCTTCCCCATTGGACCGATCTTGTGAAGACCGCCACATTCAAGGAACTTGCTCCATATGATCCTGATTGGTATTATGTCAGAGCAGCTTCTATGGCACGCAAGATCTAxxxxxxxxxTCAGAGAAATGGGTCTCGCCCACCACATTTCTGTAAGAGCAGTGGTTCTATAGCACGCCATATACTGCAGCAACTGGAGAAAATGAACATTATTGAGATGGATCCCAATGGTGGAAGACGTATTACATCCA

Fln Alignment:

sp_v1.1_unigene80219___MATACTVKDVSPHEFVRAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMARKIYxxxQRNGSRPPHFCKSSGSIARHILQQLEKMNIIEMDPNGGRRITS
A9NKW9_______________MATACTVKDVSPHEFVTAYAAHLKRSGKIELPHWTDLVKTATFKELAPYDPDWYYVRAASMARKIYxxxQRNGARPPHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain