SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80191

Length: 434 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80191
CGTCGTGACCTTGGCTGTCACTCAAGGCCGAAGGGATCTATGTTTATCATGGTGAAGATAAATATATCAGCCCTTAAAGACATCAAGGATGACATGGAGTTTGCTTCAGCACTAGTTAAGGAAGAACCAGTGGTGGTACTGCCAGGTTCCACACTTGGGATGAAAAATTGGATAAGAATATCATTTGGAACTCCTTCTGCTACATTGGAAGAGGCGTGGGATAGAATTGAATCGTTCTGCCAGAAGCATTCTAATACTATAGTAGCCGACTATAGGATTACCTAATTAATTGAAGAATGCGATGGAACGCAGTCTTGTAAAACTGTCGATTTTTGAAGAATGCCTTAGTGTAGATTTTGTATTTATTCATTGATGGTTCTGTATTGCTATCCCAATCATGGGATGAGGTAAATTATTACCATCTCCATATGAAC

Ace file of the UniGene sp_v1.1_unigene80191

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tyrosine aminotransferase, putative (EC:2.6.1.5); K00815 tyrosine aminotransferase [EC:2.6.1.5]	-	-	3.0e-19	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	tyrosine aminotransferase	-	-	1.31798e-37	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Tyrosine transaminase.	EC:2.6.1.5	-	3.0e-19	51%

Source	KEGGs	Term	e value	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	3.0e-19	51%
AutoFact	Cysteine and methionine metabolism	00270	3.0e-19	51%
AutoFact	Tyrosine metabolism	00350	3.0e-19	51%
AutoFact	Phenylalanine metabolism	00360	3.0e-19	51%
AutoFact	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	3.0e-19	51%
AutoFact	Isoquinoline alkaloid biosynthesis	00950	3.0e-19	51%
AutoFact	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	3.0e-19	51%
AutoFact	Biosynthesis of phenylpropanoids	01061	3.0e-19	51%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.0e-19	51%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	3.0e-19	51%
AutoFact	Metabolic pathways	01100	3.0e-19	51%
AutoFact	Biosynthesis of secondary metabolites	01110	3.0e-19	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Aminotransferase, class I/classII	IPR004839	-	1.31798e-37	77%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	1.31798e-37	77%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	1.31798e-37	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC1

Fln msg: your sequence is shorter than subject: 95 - 434

Fln protein: RRDLGCHSRPKGSMFIMVKINISALKDIKDDMEFASALVKEEPVVVLPGSTLGMKNWIRISFGTPSATLEEAWDRIESFCQKHSNTIVADYRIT*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGCCGAAGGGATCTATGTTTATCATGGTGAAGATAAATATATCAGCCCTTAAAGACATCAAGGATGACATGGAGTTTGCTTCAGCACTAGTTAAGGAAGAACCAGTGGTGGTACTGCCAGGTTCCACACTTGGGATGAAAAATTGGATAAGAATATCATTTGGAACTCCTTCTGCTACATTGGAAGAGGCGTGGGATAGAATTGAATCGTTCTGCCAGAAGCATTCTAATACTATAGTAGCCGACTATAGGATTACCTAA___TTAATTGAAGAATGCGATGGAACGCAGTCTTGTAAAACTGTCGATTTTTGAAGAATGCCTTAGTGTAGATTTTGTATTTATTCATTGATGGTTCTGTATTGCTATCCCAATCATGGGATGAGGTAAATTATTACCATCTCCATATGAAC

Fln Alignment:

sp_v1.1_unigene80191___LGCHSRPKGSMFIMVKINISALKDIKDDMEFASALVKEEPVVVLPGSTLGMKNWIRISFGTPSATLEEAWDRIESFCQKHSNTI
A9NVC1_______________LWCHSRPKGSMFIMVKINISALEDIKDDMEFASALVKEESVVVLPGSTLGMKNWIRISFGAPSATLEEAWDRIGSFCQRHSNTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain