SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80157

Length: 499 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80157
CGTCGTGACCTTGGCTGTCACTCAGCTCAAATGAAGAAAACACCGGGCGTTCTCGCCATGTTCCGGGATCGTGCACGCCAGCTGCAGACGACACGGTCACCTTACTTCCTCGGTCTTGACTGGCGTCACTGAAGCGGCCTGTGGGAGTTGTCCGATTACGGCTCCGATGTGGTCATCGGTTTGCTAGACACCGGCATATGGCCGGAACGGCGGAGCTTCAGCGATCAGGGCATGGGGCCCATTCCCAAGCACTGGAAAGGCCAGTGCGAAAGCGGGGTCAATTTCCCCAACACTCTCTGCAATCGGAAGCTGGTGGGGGCGCGGTTTTTCTCGAAGGGCTATGAAACCATCTTTGGTCCCATGAACGAAACTCTGGAGTCACGTTCGCCGAGGGATTCGGATGGTCATGGCACGCACACCGCCTCCACGGCCGCGGGCGGAATCGTTCCGGGAGGCAACATGATGGGTTACGCGCAGGGTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene80157

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	xylem serine proteinase 1	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	75%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	75%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	75%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	75%
Blast2go	apoplast	GO:0048046	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	75%
Blast2go	Peptidase S8, subtilisin-related	IPR015500	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPS1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 440 aas, your sequence is shorter than subject: 163 - 690

Fln protein: RRDLGCHSAQMKKTPGVLAMFRDRARQLQTTRSPYFLGLDWRH*SGLWELSDYGSDVVIGLLDTGIWPERRSFSDQGMGPIPKHWKGQCESGVNFPNTLCNRKLVGARFFSKGYETIFGPMNETLESRSPRDSDGHGTHTASTAAGGIVPGGNMMGYAQGSQ*

Protein Length: 164

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCAAATGAAGAAAACACCGGGCGTTCTCGCCATGTTCCGGGATCGTGCACGCCAGCTGCAGACGACACGGTCACCTTACTTCCTCGGTCTTGACTGGCGTCACTGAAGCGGCCTGTGGGAGTTGTCCGATTACGGCTCCGATGTGGTCATCGGTTTGCTAGACACCGGCATATGGCCGGAACGGCGGAGCTTCAGCGATCAGGGCATGGGGCCCATTCCCAAGCACTGGAAAGGCCAGTGCGAAAGCGGGGTCAATTTCCCCAACACTCTCTGCAATCGGAAGCTGGTGGGGGCGCGGTTTTTCTCGAAGGGCTATGAAACCATCTTTGGTCCCATGAACGAAACTCTGGAGTCACGTTCGCCGAGGGATTCGGATGGTCATGGCACGCACACCGCCTCCACGGCCGCGGGCGGAATCGTTCCGGGAGGCAACATGATGGGTTACGCGCAGGGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene80157___MKKTPGVLAMFRDRARQLQTTRSPYFLGLDWRH*SGLW-ELSDYGSDVVIGLLDTGIWPERRSFSDQGMGPIPKHWKGQCESGVNFPNTLCNRKLVGARFFSKGYETIFGPMNETLESRSPRDSDGHGTHTASTAAGGIVPGGNMMGYAQGS
C0PPS1_______________LEKTHGILGIYPETVYELHTTRTPQFLGLETAE-SGMWPEKANFGHDVVIGVLDTGVWPESLSFNDRGMGPVPAHWKGACESGTNFTASHCNKKLIGARFLSRGYEAAVGPINETAEFRSPRDQDGHGTHTASTAAGAVVLKADLVGYAKGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain