SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80135

Length: 935 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene80135

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	95%
FL-Next	tr=Glutamate decarboxylase; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	glutamate decarboxylase	-	-	93%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	93%
Blast2go	Glutamate decarboxylase	IPR010107	-	93%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	93%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A0EJ89

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 99 aas, your sequence is shorter than subject: 311 - 509

Fln protein: VVTLAVTQGLT*KYSMHLVL*GVLVMDRSPLYYTSFLFADVGKIGNFCLDLTILFT*DCAQLLHVVTLAVTRYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDA

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTTGACCTAGAAATATTCAATGCACCTAGTATTGTAGGGTGTATTGGTGATGGATCGATCGCCCCTGTATTACACCTCGTTTCTGTTTGCAGATGTAGGGAAAATTGGGAATTTTTGCTTAGATTTGACAATTTTATTTACATAGGACTGTGCGCAACTATTGCACGTCGTGACCTTGGCTGTCACTCGTTATTTTGAAGTAGAGCTGAAGGAAGTTAAACTGAAGAAGGATTACTATATCATGGATCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACTATTTGTGTGGCAGCCATCTTGGGTTCCACTTACAATGGAGAGTTCGAAGATGTCAAGCTGGTGAACGATCTCCTCATCCAGAAAAACAAGGAAACAGGGTGGGACACGCCCATCCATGTGGACGCCGCTAGCGGCGGATTTATTGCACCGTTCCTGTACCCTGAGTTGGAATGGGATTTCCGGCTTCCATTGGTGAAGAGCATCAACGTCAGCGGGCACAAGTATGGTCTCGTCTATGCCGGAATCGGATGGGTTATCTGGAGAGCAAAGCAAGATCTCCCTGAGGAGCTCATCTTTCACATCAATTATTTGGGCGCCGATCAGCCCACCTTCACCCTCAATTTCTCCAAAGGTGCCAGCCAAATAATTGCGCAATATTACCAACTCATACGTCTAGGGTTCGAGGGCTACCGAAATATCATGGGCAACTGCGCGGCAAACGCTAAGGCTCTGTCAGATGGTTTGGTGAGGACCGGGCGGTTCAACATTTTGTCGAAGGAGATCGGGGTCCCTCTGGTGGCATTTTCGCTAAAGGACAGTAGCAGGCACGATGAGTATGAGATTTCTGACCACCTGAGAAGGTTTGGTTGGATCGTGCCCGCGTACACCATGGCTCCCGACGCAC

Fln Alignment:

sp_v1.1_unigene80135___RYFXXXXXXXXXXXDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDA
A0EJ89_______________RYFEVELKEVKLKKDYYIMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLVNDLLIQKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRAKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIAQYYQLIRLGFEGYRNIMGNCAANAKALSDGLVRTGRFNILSKEIGVPLVAFSLKDSSRHDEYEISDHLRRFGWIVPAYTMAPDA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
676	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain