SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80131

Length: 480 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene80131
CGTCGTGACCTTGGCTGTCACTCAAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGTCGTGACCTTGGTGGATGCATTGAACCAGTTAGAAGGTGTTACCCGTCGTGACCTTGGCTGTCACTCAATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAAGCATATTTA

Ace file of the UniGene sp_v1.1_unigene80131

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	T13M22.3 protein (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q9LN15_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	alanine aminotransferase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	transferase activity	GO:0016740	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	0.0	82%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	0.0	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACH7

Fln msg: your sequence is shorter than subject: 157 - 329

Fln protein: RRDLGCHSNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRVVTLVDALNQLEGVTRRDLGCHSMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD*

Protein Length: 158

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGACGAATCATTTGAATTGTTCTTTGCAGAGAGGGATAGTATTCTTTCATCTCTAGCAAGGCGTGTCGTGACCTTGGTGGATGCATTGAACCAGTTAGAAGGTGTTACCCGTCGTGACCTTGGCTGTCACTCAATGTATGTCTTCCCTTGCATTCACCTACCACAAAAAGCAATCAAGGCTGCAGAAGCAGTAAACATGGTGCCAGATGCTTTCTATTGTCAGAGATTATTGGAGGCCACAGGCATTGTGGTTGTTGCAGGTTCCGGATTTGGTCAGGTACCTGGCACGTGGCATTTTCGAAGCACAATTTTGCCCCAAGAGGATAAAATGCCAGCCATAGTTTCTCGCTTGACAACATTCCACCAGAAGTTTATGGAAGAATTTCGTGACTAA___GCATATTTA

Fln Alignment:

sp_v1.1_unigene80131___SNISGQILASLVMNPPKSGDESFELFFAERDSILSSLARRVVTLVDALNQLEGVTRRDLGCHSMYVFPCIHLPQKAIKAAEAVNMVPDAFYCQRLLEATGIVVVAGSGFGQVPGTWHFRSTILPQEDKMPAIVSRLTTFHQKFMEEFRD
D5ACH7_______________SNISGQILASLVMNPPKSGDESFEMFFAERDGILSSLARRAKTLVDALNQLEGVTCNEAE-GAMYVFPRIHLPQQAIKAAEAVNMVPDAFYSQRLLEATGIVTVPGSGFGQVPGTWHFRSTILPPEDKIPTIVSRMTTFHQKFMEEFHD

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
192		60		40	1.0
194		40		60	1.0
195	40	60			1.0
196	40		60		1.0
200	40	60			1.0
201		60	40		1.0
202		40		60	1.0
203	50			50	1.0
205	50		50		1.0
206	50	50			1.0
207			50	50	1.0
211	50		50		1.0
259	83	16			0.994515
261			83	16	0.994515
266	83	16			0.994515
267			83	16	0.994515
268	83			16	0.994517
269	83		16		0.994517
272	80			20	0.995493
276	80	20			0.995493
281		20	80		0.995493
282	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain