SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene80102

Length: 996 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene80102 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Uncharacterized protein At3g49720; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	uncharacterized protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	73%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M2Y6

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MSRRPVNPIARRFAESTVTPSTGPFHQKSRSSPLLSIGLLLLGAFLLLGYIYSGSAIKENSREEISREALSIENGEQLSCGSEIRKALPLLQEVYGDSMRKVLHVGLDTCSVTSKLLKEDDTEAWGIEPFDITSTLDNSCRNLIRKGIVRVADIKFPLPYKAQSFPVVLVSDAPDYLSPKYLNKTLPELTRVSVDALVLFVxxKLRSQSWWQRYFESLGLQENESMTKKFELLQTQKSYKPICQIFHLSPDLSI*

Protein Length: 256

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAATTGAAGAAAAAGAAACAGTAAACCGCCGTCTGCTTCAAACAGATCGCAGTGCCTTCTTCCTGCAGGTGAACATCTGGTCTTAGAGGGGTGTAGCT_-_ATGTCTCGGAGACCAGTGAATCCCATTGCTAGACGTTTTGCAGAGAGTACAGTTACACCATCGACTGGCCCATTTCATCAGAAGTCTCGGTCATCACCTTTACTTTCAATTGGCTTGCTCCTCCTGGGGGCATTTCTTCTTCTTGGCTATATTTATAGTGGTTCAGCAATCAAAGAAAACTCCAGGGAAGAGATATCTAGGGAGGCTCTCAGTATTGAGAATGGGGAACAACTTTCTTGTGGTTCAGAAATACGGAAGGCATTACCACTTCTGCAAGAAGTTTACGGGGATAGCATGCGCAAGGTCTTACATGTTGGTCTTGACACATGTTCTGTAACCTCCAAACTGTTAAAGGAAGATGACACTGAAGCTTGGGGTATTGAACCATTTGATATAACATCCACACTAGACAATTCCTGCAGGAATTTGATTCGAAAGGGTATTGTACGGGTTGCCGACATCAAATTTCCTTTACCTTACAAAGCACAGTCATTCCCAGTTGTGCTTGTTTCAGATGCCCCGGACTATTTGTCCCCAAAATACCTGAATAAGACACTGCCAGAGCTTACTAGAGTCTCAGTTGATGCACTTGTTCTGTTTGTTxxxxxxAAATTACGGAGTCAATCATGGTGGCAAAGATACTTCGAGTCATTGGGACTACAAGAAAATGAGAGCATGACCAAAAAATTTGAGCTGCTTCAGACGCAAAAGTCCTATAAACCTATATGCCAGATATTTCATCTGAGCCCAGATCTTTCGATTTAA___GAACCATAGCTTGCATGCTTTCCAACTTGGTAAGATACCATCTATCCATGATAGTCGGGAGGTGGGAAGCTTTTTTTATCGTATATCTTTCTAAATTATCGCATTGCAGA

Fln Alignment:

sp_v1.1_unigene80102___MSRRPVNPIARRFAESTVTPSTGPFHQKSRXXXXXXXXXXXXXXXXXXGYIYSGSAIKENSREEISREALSIENGEQLSCGSEIRKALPLLQEVYGDSMRKVLHVGLDTCSVTSKLLKEDDTEAWGIEPFDITSTLDNSCRNLIRKGIVRVADIKFPLPYKAQSFPVVLVSDAPDYLSPKYLNKTLPELTRVSVDALVLFVGxxxxxxxxxxxxxxxxxxAKLRSQSWWQRYFESLGLQENESMTKKFELLQTQKSYKPICQIFHLSP
Q9M2Y6_______________MARRQVGS-TRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSIKE------VSKVTGDY-SCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDA-DSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGxxxxxxxxxxxxxxxxxxAKMRSASWWNRFFVQTNLEENDAPSKKFEQAVSKGLYKPACQVFHLKP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
977		33		66	0.997454
978		33	66		0.997454
979	66	33			0.997454
980	33		66		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain